PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_46530.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | MYB_related | ||||||||
Protein Properties | Length: 36aa MW: 4072.62 Da PI: 8.0381 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.1 | 8.5e-08 | 15 | 36 | 1 | 22 |
TSSS-HHHHHHHHHHHHHTTTT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg 22 +g+WT+eEd+ lv+++++ Gg+ MLOC_46530.1 15 KGPWTEEEDKTLVEYIQKRGGN 36 79****************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.53E-7 | 6 | 36 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.6E-9 | 6 | 35 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.551 | 10 | 36 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.2E-5 | 15 | 35 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 36 aa Download sequence Send to blast |
MGRSPCCCRD ASVKKGPWTE EEDKTLVEYI QKRGGN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_46530.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020169243.1 | 9e-17 | transcription factor RAX1-like | ||||
TrEMBL | A0A453CWA6 | 5e-16 | A0A453CWA6_AEGTS; Uncharacterized protein | ||||
STRING | MLOC_46530.1 | 4e-19 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21440.1 | 5e-12 | MYB-like 102 |