PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_4614.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family TCP
Protein Properties Length: 273aa    MW: 30008.4 Da    PI: 6.4389
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_4614.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP110.13.3e-34101179380
          TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssaseceaessss 80 
                   ++drhski T++g RdRR+Rls+++a+ fF+Lqd+LGfdk+skt++WLl+q+kpai+ l ++           +          +ss 
  MLOC_4614.1 101 FRTDRHSKIRTAQGVRDRRMRLSLDVARDFFALQDQLGFDKASKTVDWLLTQSKPAIDRLSESsrlhvagagedG----------MSSL 179
                  689************************************************************444443333221..........2222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.2E-33102184IPR005333Transcription factor, TCP
PROSITE profilePS5136934.334102160IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MLPYHPNPHG FWISREPPAQ TPNPASSFSM APPAHQDHQI QHYDHFFPGH GNQFNSETLE  60
AVLRPRPPAP PLADMPPGNG PRTGAVQAAG AGHARARKRP FRTDRHSKIR TAQGVRDRRM  120
RLSLDVARDF FALQDQLGFD KASKTVDWLL TQSKPAIDRL SESSRLHVAG AGEDGMSSLS  180
SVEREGRRLK ETELAAGSGK GAVDVEKAMR ARGGGTSVPM EHRREMNSGL MSASMTGGEY  240
YYDLGEMMCI NAGECDDDGE YDEDGDFLDG MQY
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_4614.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0050934e-79AP005093.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1294_G06.
GenBankAP0149654e-79AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankEU7024074e-79EU702407.1 Oryza sativa Japonica Group putative TCP transcription factor (DP1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020173868.11e-164transcription factor TCP18-like
TrEMBLM0WA640.0M0WA64_HORVV; Uncharacterized protein
STRINGMLOC_4614.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40523172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.22e-26TCP family protein