PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_4554.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bZIP
Protein Properties Length: 313aa    MW: 34865.3 Da    PI: 6.9223
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_4554.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_147.24.7e-15241286348
                  XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 
                  +++r++r++kNRe+A rsR+RK+a++ eLe k   Le+eNk+Lk e
  MLOC_4554.1 241 ADRRQKRMIKNRESAARSRARKQAYTNELECKLSCLEEENKRLKRE 286
                  689****************************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003389.4E-9239295IPR004827Basic-leucine zipper domain
PfamPF001703.4E-12241287IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.944241286IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.13E-10243288No hitNo description
Gene3DG3DSA:1.20.5.1704.4E-13243288No hitNo description
CDDcd147072.09E-20243297No hitNo description
PROSITE patternPS000360246261IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MSCEGGGTAI TGKKRDRAHI QTLVREGSLY NLTLSEVESH LGAPLLSMNL DEFVRSVLPD  60
EKNLPLPNGA GNSGSQSTSA FGLERQGSSI TVPLPLSKKT VDEIWRDIQQ DQDNSDDEKR  120
SSGCEAQMSF GEITLEEFLQ RAGIVTGQCQ KDAEELIDFV GTGESAHLMT RVQDFPQGTS  180
AIDAYIVRQS IAQPLSVAIP STMDAIYPDR QMSISSSLEL SDLQSPSRKR MSSQDVVYKV  240
ADRRQKRMIK NRESAARSRA RKQAYTNELE CKLSCLEEEN KRLKREKELD MLLKSAPPPE  300
PKKHLRRTRS TSF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11117GKKRDRA
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_4554.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ7864100.0DQ786410.1 Hordeum vulgare subsp. vulgare ABA responsive element binding factor 3 (ABF3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020172286.10.0ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBLA0A1B0Z5G80.0A0A1B0Z5G8_HORVU; FD-like 6 protein
TrEMBLA1XXJ10.0A1XXJ1_HORVV; ABA responsive element binding factor 3
STRINGMLOC_4554.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1859879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56850.17e-54ABA-responsive element binding protein 3