PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_44531.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | Trihelix | ||||||||
Protein Properties | Length: 215aa MW: 23996.3 Da PI: 8.4822 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 27.6 | 7.7e-09 | 14 | 99 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W++ e+ aL++a m r +++ l+ W+ v +++ + f+rs +qC++++ l+ +y+k+ + + +s +++f+ql+ MLOC_44531.1 14 WSDGETSALVDAWGPMYLRRNQNPLAVEEWRVVCSAVnaqraaEGCRFNRSLVQCQKRIYTLKDQYQKELAKGRP-----TSGWRHFTQLR 99 *************************************999954445569******************99877775.....35699999997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 3.5E-14 | 13 | 100 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MPSSKKSPGA RGPWSDGETS ALVDAWGPMY LRRNQNPLAV EEWRVVCSAV NAQRAAEGCR 60 FNRSLVQCQK RIYTLKDQYQ KELAKGRPTS GWRHFTQLRA FLADSPPGFA TKTTAASGKK 120 EKEEEVEEAS PCFPETKPAT DKNEEVVGCG CELVGSVRCC PAATVTKLAE VYERVEMKRL 180 GVKEKEMEME KNTISRCILG HKKMKVENPE ETHGN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_44531.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020181526.1 | 1e-114 | trihelix transcription factor ASIL1-like | ||||
TrEMBL | M0W7I0 | 1e-158 | M0W7I0_HORVV; Uncharacterized protein | ||||
STRING | MLOC_44531.1 | 1e-159 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14753 | 12 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05550.1 | 1e-09 | sequence-specific DNA binding transcription factors |