PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_44311.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | bZIP | ||||||||
Protein Properties | Length: 205aa MW: 23016.9 Da PI: 7.8921 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 29 | 2.4e-09 | 11 | 49 | 12 | 50 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 12 kNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 NR +A rs +RK +i eLe+kv +L++e ++L +l MLOC_44311.2 11 ANRQSAARSKERKARYITELERKVHTLQTEATTLSAQLT 49 6*********************************98775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50217 | 9.243 | 8 | 65 | IPR004827 | Basic-leucine zipper domain |
SMART | SM00338 | 3.4E-7 | 8 | 64 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 4.4E-10 | 8 | 57 | No hit | No description |
SuperFamily | SSF57959 | 6.26E-10 | 8 | 55 | No hit | No description |
CDD | cd14703 | 2.09E-20 | 8 | 54 | No hit | No description |
Pfam | PF00170 | 1.8E-7 | 9 | 51 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
FLSFLCFRIL ANRQSAARSK ERKARYITEL ERKVHTLQTE ATTLSAQLTL FQRDTTGLSA 60 ENTELKIRLQ AMELQAQLRD ALNNTLKQEL ERLKIATGEM TKPDEAYNTG MHHVPYNPSF 120 FQLSEQHAPQ HHSSVHQLPS QFQPPHPNVP SHQMLSHPNT FPDMMQQDSL GRFQGLDIGK 180 GSAAVKLEAE AAVRSEGSSI SAGEK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:14704272}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_44311.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK374900 | 0.0 | AK374900.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3079L07. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020158207.1 | 1e-138 | transcription factor RF2b-like isoform X1 | ||||
Swissprot | Q6S4P4 | 8e-89 | RF2B_ORYSJ; Transcription factor RF2b | ||||
TrEMBL | A0A287H7V0 | 1e-143 | A0A287H7V0_HORVV; Uncharacterized protein | ||||
STRING | MLOC_44311.1 | 1e-144 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40620.1 | 5e-57 | bZIP family protein |
Publications ? help Back to Top | |||
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