PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_44167.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB
Protein Properties Length: 260aa    MW: 28596.2 Da    PI: 7.3569
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_44167.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding521.6e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+d+++ +G+g +W + + + g++R++k+c++rw++yl
     MLOC_44167.1 14 KGPWSPEEDMKLKDYIHTHGTGgNWIALPTKAGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP

2Myb_DNA-binding37.65e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g ++ eEd  +  +++  G++ W+ Ia+ ++ gRt++++k++w++
     MLOC_44167.1  69 GDFSDEEDRVICALFAAIGSR-WSIIAAQLP-GRTDNDVKNYWNT 111
                      679******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.945962IPR017930Myb domain
SuperFamilySSF466892.26E-2612109IPR009057Homeodomain-like
SMARTSM007175.5E-121364IPR001005SANT/Myb domain
PfamPF002491.7E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-241569IPR009057Homeodomain-like
CDDcd001679.75E-101662No hitNo description
PROSITE profilePS5129422.26263117IPR017930Myb domain
SMARTSM007173.1E-1167115IPR001005SANT/Myb domain
PfamPF002492.6E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-2270116IPR009057Homeodomain-like
CDDcd001676.88E-871111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MGRAPCCDKG SVKKGPWSPE EDMKLKDYIH THGTGGNWIA LPTKAGLKRC GKSCRLRWLN  60
YLRPNIKHGD FSDEEDRVIC ALFAAIGSRW SIIAAQLPGR TDNDVKNYWN TKLKKKQLHL  120
LIAAAAHGQQ YSSRPPEPPF TLEHHHHTSP TSAASLGQLL MFGVGGGDQQ QQYMPSCSSV  180
DMSNNTSAAA VGLQESLMFG GLEFQQQEEH TNNLLSPPPA AFGNDIMTYE HHEMISPSGF  240
FFYGDGAGAA ATQEGTRFLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-25141167107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_44167.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020200060.11e-163transcription factor RAX2-like
TrEMBLM0W6710.0M0W671_HORVV; Uncharacterized protein
STRINGMLOC_44167.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.15e-75myb domain protein 36