PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_44012.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | B3 | ||||||||
Protein Properties | Length: 227aa MW: 24481.8 Da PI: 10.0493 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 96.4 | 1.9e-30 | 50 | 142 | 1 | 86 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+ tpsdv+k++rlv+pk+ ae+h gg + ++ l +ed g++W+++++y+++s++yvltkGW++Fvk++gL +gD+v F+++ MLOC_44012.1 50 FDKTVTPSDVGKLNRLVIPKQNAEKHfplqlpaGGGESKGLLLNFEDDAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLGAGDVVGFYRSA 142 89*******************************77778999************************************************9653 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.0E-38 | 46 | 169 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.96E-29 | 48 | 144 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.11E-29 | 48 | 154 | No hit | No description |
SMART | SM01019 | 1.7E-22 | 50 | 149 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.465 | 50 | 160 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.8E-27 | 50 | 142 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MLRKHTYFDE LAQSKRAFAA SAALSAPTTS GDAGGSASPP SPAAVREHLF DKTVTPSDVG 60 KLNRLVIPKQ NAEKHFPLQL PAGGGESKGL LLNFEDDAGK VWRFRYSYWN SSQSYVLTKG 120 WSRFVKEKGL GAGDVVGFYR SAAGRTGEDS KFFIDCRLRP NTNTAAEADP VDQSSAPVQK 180 AVRLFGVDLL AAPEQGMPGG CKRARDLVKP PPPKVAFKKQ CIELALA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 1e-51 | 44 | 162 | 2 | 116 | B3 domain-containing transcription factor NGA1 |
5os9_B | 1e-51 | 44 | 162 | 2 | 116 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_44012.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK369681 | 0.0 | AK369681.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2095J19. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020185929.1 | 1e-119 | AP2/ERF and B3 domain-containing protein Os01g0693400-like | ||||
Swissprot | Q8RZX9 | 1e-103 | Y1934_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0693400 | ||||
TrEMBL | A0A287LD43 | 1e-164 | A0A287LD43_HORVV; Uncharacterized protein | ||||
STRING | MLOC_44012.1 | 1e-166 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP456 | 38 | 203 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68840.2 | 2e-55 | related to ABI3/VP1 2 |