PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_4400.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family Trihelix
Protein Properties Length: 277aa    MW: 30223.3 Da    PI: 10.5222
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_4400.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix68.99.9e-2218107186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  +Wt++e+laLiea+r+++e+l++g+l++++W+ev+ ++        +   +s +qC++k+e+l+kry++++ ++ +r+++   ++p+f  l+
  MLOC_4400.1  18 CWTHEETLALIEAYRDKWEALKKGNLRAADWDEVAGAVtarcgrFPTATYKSGVQCRHKIEKLRKRYRAERGRSMGRSKG--PKWPFFPLLH 107
                  8*************************************9988877778899**********************9998443..47****9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.5E-2117108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
RGGVGPGGGG GRRLPPPCWT HEETLALIEA YRDKWEALKK GNLRAADWDE VAGAVTARCG  60
RFPTATYKSG VQCRHKIEKL RKRYRAERGR SMGRSKGPKW PFFPLLHDLA GGGGPDASPN  120
PIIKIKPRGN AIPASPSPVS SPSSEDAGRS RSLHGLISNG GGGSGLRFTI PKASRTKPGV  180
PRDARLDRDR SEEDPEAEAM AEVASALRAV GQGFLRMEER RLELSLQMEK ERMESEMKRT  240
QALLDAQQLF VEAFLGKQQP HHKKAKLVSS ASAMEED
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_4400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3700980.0AK370098.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2104O13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020166357.11e-176trihelix transcription factor ASIL1-like
TrEMBLF2E1S70.0F2E1S7_HORVV; Predicted protein
STRINGMLOC_4400.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56893250
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.12e-23Trihelix family protein