PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_43923.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | FAR1 | ||||||||
Protein Properties | Length: 443aa MW: 51488.9 Da PI: 9.4075 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 47.1 | 7.9e-15 | 75 | 154 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++Yn Y+ e+GF vr ++s+ + + + +++fvC + g++ +++++ +tr+gC a ++v +++d+ w++ + +++HnH+l+ MLOC_43923.5 75 EYYNLYSWECGFGVRYAESRLNVHRT-KCTQEFVCACAGRPLQTNSR---------STRCGCLALMRVLRSEDKDWYICEHKTDHNHALS 154 69****************99995555.67789*******99986555.........9******************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.6E-11 | 75 | 154 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.8E-26 | 277 | 369 | IPR018289 | MULE transposase domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 443 aa Download sequence Send to blast |
MREDGDAESV VVNNSKGSCW TRRVRVGNTS EDRDPNPTRV PALEASMRAY TDNKADTVVN 60 PALGTSFDSV EEAYEYYNLY SWECGFGVRY AESRLNVHRT KCTQEFVCAC AGRPLQTNSR 120 STRCGCLALM RVLRSEDKDW YICEHKTDHN HALSVNCMEK LHWKSHRHID RYTRDLVKQL 180 RENNISLSKV YSVVGSFFGS VKEVPFTKRS LKTLCGKLSR EQSENDATKT IEVFNAMRAE 240 DPEFKYSVQV DDDGRVKTLM WTTGRSIEQF KCFGDDVTFD TTYKINLYDM PFGLFVGVNN 300 HFQSIIFGGV LMSDEKIDTF KWIFTEFFQM IGAPQPRTML TDQARAMEVA IEDVMKHTIH 360 RWCKWHVLKK AKECLGPLLG KGMNSSRSST RWCTMLSVRK SLRMVGRVWL RIMVYRKIRF 420 SPRYRRHEKS GLSHILWMYS VRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_43923.5 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK359093 | 0.0 | AK359093.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1089E14. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014753620.1 | 1e-178 | putative protein FAR1-RELATED SEQUENCE 10 | ||||
Refseq | XP_024313565.1 | 1e-178 | putative protein FAR1-RELATED SEQUENCE 10 | ||||
TrEMBL | M0W5D2 | 0.0 | M0W5D2_HORVV; Uncharacterized protein | ||||
STRING | MLOC_43923.3 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 8e-44 | FAR1-related sequence 5 |