PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_43923.4

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

FAR1

Protein Properties

Length: 348aa MW: 40944.6 Da PI: 10.3705

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_43923.4	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	28.5	5.1e-09	21	59	52	90
FAR1 52 rrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++++ +tr+gC a ++v +++d+ w++ + +++HnH+l+ MLOC_43923.4 21 QTNSRSTRCGCLALMRVLRSEDKDWYICEHKTDHNHALS 59 467899******************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.5E-6	22	59	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.8E-26	182	274	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MFIGQNVRRN LCVHVRGRPL QTNSRSTRCG CLALMRVLRS EDKDWYICEH KTDHNHALSV 60 NCMEKLHWKS HRHIDRYTRD LVKQLRENNI SLSKVYSVVG SFFGSVKEVP FTKRSLKTLC 120 GKLSREQSEN DATKTIEVFN AMRAEDPEFK YSVQVDDDGR VKTLMWTTGR SIEQFKCFGD 180 DVTFDTTYKI NLYDMPFGLF VGVNNHFQSI IFGGVLMSDE KIDTFKWIFT EFFQMIGAPQ 240 PRTMLTDQAR AMEVAIEDVM KHTIHRWCKW HVLKKAKECL GPLLGKGMNS SRSSTRWCTM 300 LSVRKSLRMV GRVWLRIMVY RKIRFSPRYR RHEKSGLSHI LWMYSVRR

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MFIGQNVRRN LCVHVRGRPL QTNSRSTRCG CLALMRVLRS EDKDWYICEH KTDHNHALSV  60
NCMEKLHWKS HRHIDRYTRD LVKQLRENNI SLSKVYSVVG SFFGSVKEVP FTKRSLKTLC  120
GKLSREQSEN DATKTIEVFN AMRAEDPEFK YSVQVDDDGR VKTLMWTTGR SIEQFKCFGD  180
DVTFDTTYKI NLYDMPFGLF VGVNNHFQSI IFGGVLMSDE KIDTFKWIFT EFFQMIGAPQ  240
PRTMLTDQAR AMEVAIEDVM KHTIHRWCKW HVLKKAKECL GPLLGKGMNS SRSSTRWCTM  300
LSVRKSLRMV GRVWLRIMVY RKIRFSPRYR RHEKSGLSHI LWMYSVRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_43923.4

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK359093	0.0	AK359093.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1089E14.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014753620.1	1e-128	putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_020197126.1	1e-124	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_024313565.1	1e-128	putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	M0W5D1	0.0	M0W5D1_HORVV; Uncharacterized protein
STRING	MLOC_43923.3	0.0	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-39	FAR1-related sequence 5