PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_43923.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family FAR1
Protein Properties Length: 443aa    MW: 51488.9 Da    PI: 9.4075
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_43923.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR147.17.9e-1575154190
          FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                   ++Yn Y+ e+GF vr ++s+ + + +   +++fvC + g++ +++++         +tr+gC a ++v +++d+ w++ + +++HnH+l+
  MLOC_43923.3  75 EYYNLYSWECGFGVRYAESRLNVHRT-KCTQEFVCACAGRPLQTNSR---------STRCGCLALMRVLRSEDKDWYICEHKTDHNHALS 154
                   69****************99995555.67789*******99986555.........9******************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.6E-1175154IPR004330FAR1 DNA binding domain
PfamPF105512.8E-26277369IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MREDGDAESV VVNNSKGSCW TRRVRVGNTS EDRDPNPTRV PALEASMRAY TDNKADTVVN  60
PALGTSFDSV EEAYEYYNLY SWECGFGVRY AESRLNVHRT KCTQEFVCAC AGRPLQTNSR  120
STRCGCLALM RVLRSEDKDW YICEHKTDHN HALSVNCMEK LHWKSHRHID RYTRDLVKQL  180
RENNISLSKV YSVVGSFFGS VKEVPFTKRS LKTLCGKLSR EQSENDATKT IEVFNAMRAE  240
DPEFKYSVQV DDDGRVKTLM WTTGRSIEQF KCFGDDVTFD TTYKINLYDM PFGLFVGVNN  300
HFQSIIFGGV LMSDEKIDTF KWIFTEFFQM IGAPQPRTML TDQARAMEVA IEDVMKHTIH  360
RWCKWHVLKK AKECLGPLLG KGMNSSRSST RWCTMLSVRK SLRMVGRVWL RIMVYRKIRF  420
SPRYRRHEKS GLSHILWMYS VRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_43923.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3590930.0AK359093.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1089E14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014753620.11e-178putative protein FAR1-RELATED SEQUENCE 10
RefseqXP_024313565.11e-178putative protein FAR1-RELATED SEQUENCE 10
TrEMBLM0W5D20.0M0W5D2_HORVV; Uncharacterized protein
STRINGMLOC_43923.30.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6191991
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.18e-44FAR1-related sequence 5