PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_43923.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family FAR1
Protein Properties Length: 397aa    MW: 46447.5 Da    PI: 9.5794
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_43923.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR147.36.6e-1529108190
          FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                   ++Yn Y+ e+GF vr ++s+ + + +   +++fvC + g++ +++++         +tr+gC a ++v +++d+ w++ + +++HnH+l+
  MLOC_43923.2  29 EYYNLYSWECGFGVRYAESRLNVHRT-KCTQEFVCACAGRPLQTNSR---------STRCGCLALMRVLRSEDKDWYICEHKTDHNHALS 108
                   69****************99995555.67789*******99986555.........9******************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-1129108IPR004330FAR1 DNA binding domain
PfamPF105512.3E-26231323IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MRAYTDNKAD TVVNPALGTS FDSVEEAYEY YNLYSWECGF GVRYAESRLN VHRTKCTQEF  60
VCACAGRPLQ TNSRSTRCGC LALMRVLRSE DKDWYICEHK TDHNHALSVN CMEKLHWKSH  120
RHIDRYTRDL VKQLRENNIS LSKVYSVVGS FFGSVKEVPF TKRSLKTLCG KLSREQSEND  180
ATKTIEVFNA MRAEDPEFKY SVQVDDDGRV KTLMWTTGRS IEQFKCFGDD VTFDTTYKIN  240
LYDMPFGLFV GVNNHFQSII FGGVLMSDEK IDTFKWIFTE FFQMIGAPQP RTMLTDQARA  300
MEVAIEDVMK HTIHRWCKWH VLKKAKECLG PLLGKGMNSS RSSTRWCTML SVRKSLRMVG  360
RVWLRIMVYR KIRFSPRYRR HEKSGLSHIL WMYSVRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_43923.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3590930.0AK359093.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1089E14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014753620.11e-166putative protein FAR1-RELATED SEQUENCE 10
RefseqXP_024313565.11e-166putative protein FAR1-RELATED SEQUENCE 10
TrEMBLA0A287SEB90.0A0A287SEB9_HORVV; Uncharacterized protein
TrEMBLA0A287SEK00.0A0A287SEK0_HORVV; Uncharacterized protein
TrEMBLM0W5C90.0M0W5C9_HORVV; Uncharacterized protein
TrEMBLM0W5D20.0M0W5D2_HORVV; Uncharacterized protein
STRINGMLOC_43923.30.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-44FAR1-related sequence 5