PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_43901.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | C2H2 | ||||||||
Protein Properties | Length: 120aa MW: 12753.1 Da PI: 8.7781 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 20.6 | 1.2e-06 | 81 | 103 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ Cg++F+ +++L++H+ + H MLOC_43901.2 81 PCSQCGEVFTKPDTLEHHQAVrH 103 799****************9888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00028 | 0 | 80 | 103 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.388 | 80 | 108 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 120 aa Download sequence Send to blast |
MRDVATVDGA SSAASVVVDH RDTAPLNRSS RRAHHSSSSS SAGGGGGHPS SLRGLSGCYE 60 CRAINVEPVS RRYPRPRELC PCSQCGEVFT KPDTLEHHQA VRHAGKFSKP AASIDAYSHI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_43901.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU226854 | 3e-41 | EU226854.1 Oryza barthii isolate H10 putative nucleic acid binding protein (Os04g02510) gene, complete sequence. | |||
GenBank | EU226855 | 3e-41 | EU226855.1 Oryza meridionalis isolate H11 putative nucleic acid binding protein (Os04g02510) gene, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020166174.1 | 1e-42 | uncharacterized protein LOC109751701 | ||||
TrEMBL | A0A446LQ61 | 3e-46 | A0A446LQ61_TRITD; Uncharacterized protein | ||||
STRING | MLOC_43901.1 | 7e-69 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75710.1 | 5e-11 | C2H2-like zinc finger protein |