PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_43730.9 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | GRAS | ||||||||
Protein Properties | Length: 558aa MW: 62817.3 Da PI: 6.385 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 322.6 | 7.9e-99 | 180 | 549 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 +lL++cA+ v + d + a +lL++++++asp+gd++qRla f+e+L+arl++++s++y l+++ ts ++++ a++lf ++ + k+++l a MLOC_43730.9 180 HTLLIHCAKSVMD-DRRSAGELLKEIKQHASPTGDATQRLAYWFAEGLEARLTGTGSQVYGLLTAECTS---RVRHMEAYQLFMSTCCFRKVAFLFA 272 679******9987.8999******************************************999998888...8999********************* PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlelee 193 N+aI +a+ g +r+Hi+D+++ G+QWp Ll+ LasR++gpp++RiT ++ p++g ++ +e++g+rLa++A+elgvpf++++ ++ +++++ +e+ MLOC_43730.9 273 NKAIFNAAVGRSRLHIVDYGLHCGFQWPELLRWLASRDGGPPEVRITHIELPQPGvyLEKHMEQIGNRLADIAQELGVPFKYRA-IMAQWQTICVED 368 *******************************************************9999*************************.6999******** PP GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288 L+++p+EalaVn +++ +l+desv +++ +rd+vL + +++P+v+v + + ++ ++ Fl rf eal y+sa+fd+l+a++pres+ r +Er MLOC_43730.9 369 LNMEPDEALAVNDQFNFRTLMDESVVIANlnPRDAVLGNISKMKPDVFVQSTVNGSY-GTFFLSRFREALFYHSAVFDMLDATMPRESKLRLALERD 464 **************************999999***********************99.789************************************ PP GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 ++g+ + n+va eg++r+er et+++W+ r ++aG++++pl+ +++k a+ ++ + + + ++e++++l++gWk+r L++ S W MLOC_43730.9 465 VFGWIVLNAVAYEGEDRVERGETYKHWQIRNQRAGLRQLPLNRETVKMARDMVMGDYHKDFDIDEDHQWLLQGWKGRILYAHSTW 549 **************************************************9998888788************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 55.369 | 153 | 530 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.7E-96 | 180 | 549 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 558 aa Download sequence Send to blast |
MEEEDDVDED NPALLKAQWP FAQILSSSMH ASTLMADQGG ALAIDVHSPN SAIDVNSPSS 60 AIFKFKGVDE VRSLLLLPNG DYNTHMFSTA FVRGMEEANK FLPTNCELTT TGGHDLPKEK 120 SGRGRKGRHG EVDADISRTS RLVEAGAGEV LDQMLIAMSN ETGNRNKKGR KSKARVVDLH 180 TLLIHCAKSV MDDRRSAGEL LKEIKQHASP TGDATQRLAY WFAEGLEARL TGTGSQVYGL 240 LTAECTSRVR HMEAYQLFMS TCCFRKVAFL FANKAIFNAA VGRSRLHIVD YGLHCGFQWP 300 ELLRWLASRD GGPPEVRITH IELPQPGVYL EKHMEQIGNR LADIAQELGV PFKYRAIMAQ 360 WQTICVEDLN MEPDEALAVN DQFNFRTLMD ESVVIANLNP RDAVLGNISK MKPDVFVQST 420 VNGSYGTFFL SRFREALFYH SAVFDMLDAT MPRESKLRLA LERDVFGWIV LNAVAYEGED 480 RVERGETYKH WQIRNQRAGL RQLPLNRETV KMARDMVMGD YHKDFDIDED HQWLLQGWKG 540 RILYAHSTWV AEGASSHC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 4e-42 | 183 | 549 | 8 | 374 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_43730.9 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020172172.1 | 0.0 | scarecrow-like protein 33 | ||||
TrEMBL | M0W4V7 | 0.0 | M0W4V7_HORVV; Uncharacterized protein | ||||
STRING | MLOC_43730.1 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 1e-128 | SCARECROW-like 14 |