PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_43730.5
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family GRAS
Protein Properties Length: 558aa    MW: 62817.3 Da    PI: 6.385
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_43730.5genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS322.67.9e-991805492373
          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                    +lL++cA+ v + d + a +lL++++++asp+gd++qRla  f+e+L+arl++++s++y  l+++ ts    ++++ a++lf  ++ + k+++l a
  MLOC_43730.5 180 HTLLIHCAKSVMD-DRRSAGELLKEIKQHASPTGDATQRLAYWFAEGLEARLTGTGSQVYGLLTAECTS---RVRHMEAYQLFMSTCCFRKVAFLFA 272
                   679******9987.8999******************************************999998888...8999********************* PP

          GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlelee 193
                   N+aI +a+ g +r+Hi+D+++  G+QWp Ll+ LasR++gpp++RiT ++ p++g   ++ +e++g+rLa++A+elgvpf++++ ++ +++++ +e+
  MLOC_43730.5 273 NKAIFNAAVGRSRLHIVDYGLHCGFQWPELLRWLASRDGGPPEVRITHIELPQPGvyLEKHMEQIGNRLADIAQELGVPFKYRA-IMAQWQTICVED 368
                   *******************************************************9999*************************.6999******** PP

          GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288
                   L+++p+EalaVn +++  +l+desv +++  +rd+vL  + +++P+v+v +  + ++ ++ Fl rf eal y+sa+fd+l+a++pres+ r  +Er 
  MLOC_43730.5 369 LNMEPDEALAVNDQFNFRTLMDESVVIANlnPRDAVLGNISKMKPDVFVQSTVNGSY-GTFFLSRFREALFYHSAVFDMLDATMPRESKLRLALERD 464
                   **************************999999***********************99.789************************************ PP

          GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                   ++g+ + n+va eg++r+er et+++W+ r ++aG++++pl+ +++k a+ ++   + + + ++e++++l++gWk+r L++ S W
  MLOC_43730.5 465 VFGWIVLNAVAYEGEDRVERGETYKHWQIRNQRAGLRQLPLNRETVKMARDMVMGDYHKDFDIDEDHQWLLQGWKGRILYAHSTW 549
                   **************************************************9998888788************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.369153530IPR005202Transcription factor GRAS
PfamPF035142.7E-96180549IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MEEEDDVDED NPALLKAQWP FAQILSSSMH ASTLMADQGG ALAIDVHSPN SAIDVNSPSS  60
AIFKFKGVDE VRSLLLLPNG DYNTHMFSTA FVRGMEEANK FLPTNCELTT TGGHDLPKEK  120
SGRGRKGRHG EVDADISRTS RLVEAGAGEV LDQMLIAMSN ETGNRNKKGR KSKARVVDLH  180
TLLIHCAKSV MDDRRSAGEL LKEIKQHASP TGDATQRLAY WFAEGLEARL TGTGSQVYGL  240
LTAECTSRVR HMEAYQLFMS TCCFRKVAFL FANKAIFNAA VGRSRLHIVD YGLHCGFQWP  300
ELLRWLASRD GGPPEVRITH IELPQPGVYL EKHMEQIGNR LADIAQELGV PFKYRAIMAQ  360
WQTICVEDLN MEPDEALAVN DQFNFRTLMD ESVVIANLNP RDAVLGNISK MKPDVFVQST  420
VNGSYGTFFL SRFREALFYH SAVFDMLDAT MPRESKLRLA LERDVFGWIV LNAVAYEGED  480
RVERGETYKH WQIRNQRAGL RQLPLNRETV KMARDMVMGD YHKDFDIDED HQWLLQGWKG  540
RILYAHSTWV AEGASSHC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-421835498374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_43730.5
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020172172.10.0scarecrow-like protein 33
TrEMBLM0W4V70.0M0W4V7_HORVV; Uncharacterized protein
STRINGMLOC_43730.10.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-128SCARECROW-like 14