PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_43316.7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | FAR1 | ||||||||
Protein Properties | Length: 727aa MW: 81703.9 Da PI: 6.3485 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 70.7 | 3.4e-22 | 106 | 192 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y++Y++++GFsvrk k+++ + +++i ++++ Cskeg +e ek + +e+ + ++trt+C+a+++ + +++g+w+v++l+++HnH+l+ MLOC_43316.7 106 LYCDYGHHTGFSVRKGKQSYFTGTKRIRTKDYFCSKEGLKEAEKLT--DENFNDPHTRTNCRAMVRFRVNSQGEWRVIRLVSDHNHNLV 192 7*****************************************9988..9999***********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.2E-19 | 106 | 192 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 5.0E-30 | 315 | 409 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.606 | 598 | 634 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 0.0036 | 609 | 636 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 727 aa Download sequence Send to blast |
MVNADGEGAD AGGGDPMCVD ENAGAVVGAD QCEEAGPQGG GAPVGLEGTS GEGGQVPVSH 60 PGGGMRVRGA TVEEESEEAP TVQGSKEGAE ELLLKVVYSE EEAYKLYCDY GHHTGFSVRK 120 GKQSYFTGTK RIRTKDYFCS KEGLKEAEKL TDENFNDPHT RTNCRAMVRF RVNSQGEWRV 180 IRLVSDHNHN LVRPEERHLL RSAKSLIAGR SCSAADAVLY GGYQLGGVPS QMAASTSVTK 240 NAEAKQDLLP GFSGVTRTSA VGTGELQSIV SHLKSRANVD GMFYWDVHLD RAGRMSNFFW 300 RDGRCRMDYD CFGDVVVFDS TYRLNKQNYI VAPFVGVNHH WQTTMYGCAL LADESVSSFT 360 WLFKSFLEAM GNRQPRSIFT NQDQVMSNAI EEVFPNTRHR IAHWHIQKNA ASRLGALNAS 420 KAFNKMFTKC MQGCDSESEF EETWTAMLRE FKLQDNKWLS KLYKLKQKWC GALNKCTFDG 480 GVENEPQCDS LSNIFTCIVD KSTSLSTIAA AVDKLTEDWR EKEFDEDVRC CQRPLSCIIK 540 HSDILNHAAK VYTHRIYKLF ETYFLDGCGA TKFKALPCED SETYRFEMTM QGRGSRVCTV 600 HLNMSTMQLT CSCSQFETMG LLCPHTLKAL SIKNVGKIPE IYILKRWTRD AKQWLFNPKQ 660 YESSYQECMD DETGYCNHAM RYAYDLVTKS EGQEELRRSL WEALEGGEKE LEKYLENATQ 720 YAQSYAT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_43316.7 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020182740.1 | 0.0 | protein FAR1-RELATED SEQUENCE 9-like isoform X1 | ||||
Refseq | XP_020182741.1 | 0.0 | protein FAR1-RELATED SEQUENCE 9-like isoform X1 | ||||
TrEMBL | A0A287VFN6 | 0.0 | A0A287VFN6_HORVV; Uncharacterized protein | ||||
STRING | MLOC_43316.2 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 2e-85 | FAR1-related sequence 5 |