PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_43316.2

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

FAR1

Protein Properties

Length: 727aa MW: 81703.9 Da PI: 6.3485

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_43316.2	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.7	3.4e-22	106	192	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y++Y++++GFsvrk k+++ + +++i ++++ Cskeg +e ek + +e+ + ++trt+C+a+++ + +++g+w+v++l+++HnH+l+ MLOC_43316.2 106 LYCDYGHHTGFSVRKGKQSYFTGTKRIRTKDYFCSKEGLKEAEKLT--DENFNDPHTRTNCRAMVRFRVNSQGEWRVIRLVSDHNHNLV 192 7***************************************9988..9999*********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-19	106	192	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.0E-30	315	409	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.606	598	634	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0036	609	636	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 727 aa Download sequence Send to blast
MVNADGEGAD AGGGDPMCVD ENAGAVVGAD QCEEAGPQGG GAPVGLEGTS GEGGQVPVSH 60 PGGGMRVRGA TVEEESEEAP TVQGSKEGAE ELLLKVVYSE EEAYKLYCDY GHHTGFSVRK 120 GKQSYFTGTK RIRTKDYFCS KEGLKEAEKL TDENFNDPHT RTNCRAMVRF RVNSQGEWRV 180 IRLVSDHNHN LVRPEERHLL RSAKSLIAGR SCSAADAVLY GGYQLGGVPS QMAASTSVTK 240 NAEAKQDLLP GFSGVTRTSA VGTGELQSIV SHLKSRANVD GMFYWDVHLD RAGRMSNFFW 300 RDGRCRMDYD CFGDVVVFDS TYRLNKQNYI VAPFVGVNHH WQTTMYGCAL LADESVSSFT 360 WLFKSFLEAM GNRQPRSIFT NQDQVMSNAI EEVFPNTRHR IAHWHIQKNA ASRLGALNAS 420 KAFNKMFTKC MQGCDSESEF EETWTAMLRE FKLQDNKWLS KLYKLKQKWC GALNKCTFDG 480 GVENEPQCDS LSNIFTCIVD KSTSLSTIAA AVDKLTEDWR EKEFDEDVRC CQRPLSCIIK 540 HSDILNHAAK VYTHRIYKLF ETYFLDGCGA TKFKALPCED SETYRFEMTM QGRGSRVCTV 600 HLNMSTMQLT CSCSQFETMG LLCPHTLKAL SIKNVGKIPE IYILKRWTRD AKQWLFNPKQ 660 YESSYQECMD DETGYCNHAM RYAYDLVTKS EGQEELRRSL WEALEGGEKE LEKYLENATQ 720 YAQSYAT

Sequence ? help Back to Top

Protein Sequence Length: 727 aa Download sequence Send to blast

MVNADGEGAD AGGGDPMCVD ENAGAVVGAD QCEEAGPQGG GAPVGLEGTS GEGGQVPVSH  60
PGGGMRVRGA TVEEESEEAP TVQGSKEGAE ELLLKVVYSE EEAYKLYCDY GHHTGFSVRK  120
GKQSYFTGTK RIRTKDYFCS KEGLKEAEKL TDENFNDPHT RTNCRAMVRF RVNSQGEWRV  180
IRLVSDHNHN LVRPEERHLL RSAKSLIAGR SCSAADAVLY GGYQLGGVPS QMAASTSVTK  240
NAEAKQDLLP GFSGVTRTSA VGTGELQSIV SHLKSRANVD GMFYWDVHLD RAGRMSNFFW  300
RDGRCRMDYD CFGDVVVFDS TYRLNKQNYI VAPFVGVNHH WQTTMYGCAL LADESVSSFT  360
WLFKSFLEAM GNRQPRSIFT NQDQVMSNAI EEVFPNTRHR IAHWHIQKNA ASRLGALNAS  420
KAFNKMFTKC MQGCDSESEF EETWTAMLRE FKLQDNKWLS KLYKLKQKWC GALNKCTFDG  480
GVENEPQCDS LSNIFTCIVD KSTSLSTIAA AVDKLTEDWR EKEFDEDVRC CQRPLSCIIK  540
HSDILNHAAK VYTHRIYKLF ETYFLDGCGA TKFKALPCED SETYRFEMTM QGRGSRVCTV  600
HLNMSTMQLT CSCSQFETMG LLCPHTLKAL SIKNVGKIPE IYILKRWTRD AKQWLFNPKQ  660
YESSYQECMD DETGYCNHAM RYAYDLVTKS EGQEELRRSL WEALEGGEKE LEKYLENATQ  720
YAQSYAT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_43316.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020182740.1	0.0	protein FAR1-RELATED SEQUENCE 9-like isoform X1
Refseq	XP_020182741.1	0.0	protein FAR1-RELATED SEQUENCE 9-like isoform X1
TrEMBL	A0A287VFN6	0.0	A0A287VFN6_HORVV; Uncharacterized protein
STRING	MLOC_43316.2	0.0	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-85	FAR1-related sequence 5