PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_43207.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ERF
Protein Properties Length: 326aa    MW: 35311.2 Da    PI: 6.3903
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_43207.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.55e-16133183255
           AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   g  GVr ++ +g+++AeIrd    + k +r++lg+f t+e Aa a+++a+ + +g
  MLOC_43207.1 133 GLIGVRKRP-WGKFAAEIRDsT--R-KGARVWLGTFNTPEAAAMAYDQAAFSVRG 183
                   567******.**********32..2.24**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.85E-20133192IPR016177DNA-binding domain
PROSITE profilePS5103221.087133191IPR001471AP2/ERF domain
PRINTSPR003672.4E-7134145IPR001471AP2/ERF domain
PfamPF008477.8E-12135183IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-26136191IPR001471AP2/ERF domain
SMARTSM003806.0E-28136197IPR001471AP2/ERF domain
CDDcd000187.15E-15136193No hitNo description
PRINTSPR003672.4E-7157173IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MEQHFIHFGA TTSYSTPTPP PEAQASPTFA SSTPDYHSSP SAFDMGDTDD MHLLNTLLLQ  60
MDASHMPNAH YSFDMDMDMD MEPSSSSTSS SSSSYSYSYS SSDQQQGMPT TTEQSPSKRR  120
ASSTQPHPAA TKGLIGVRKR PWGKFAAEIR DSTRKGARVW LGTFNTPEAA AMAYDQAAFS  180
VRGAAAILNY PVDRVQESLR TLALRPDTAG GSPVLALKRR HSIRKRSPNK AKKTTAGATI  240
LAPTNTKMIT TNDVDQAAAA STAGSGVVEL EDLGADYLEE LLRVSDEPSA SSTMVMTGYD  300
HQHHHHVYVD DQSALTNMAP MLFPHC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-231361911772Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_43207.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198425.11e-125ethylene-responsive transcription factor 1B-like
TrEMBLA0A287MW630.0A0A287MW63_HORVV; Uncharacterized protein
STRINGMLOC_43207.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.12e-42ethylene response factor 1