PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_43041.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | AP2 | ||||||||
Protein Properties | Length: 152aa MW: 17284.7 Da PI: 10.0838 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.1 | 1.1e-18 | 9 | 58 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta+ Aa+a+++a+ k++g MLOC_43041.3 9 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAQAAARAYDQAAIKFRG 58 78*******************......55************************997 PP | |||||||
2 | AP2 | 28.2 | 4.7e-09 | 101 | 143 | 1 | 47 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaai 47 s+++GV+ +k g+W+A+I +k ++lg ++t+ +Aak+ + MLOC_43041.3 101 SRFRGVTLHK-CGKWEARIGQlM----GKKFVYLGLYDTEMDAAKLVD 143 789*******.7******77733....25**********669998866 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.5E-10 | 9 | 58 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.75E-16 | 9 | 66 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.0E-30 | 10 | 72 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.9E-18 | 10 | 65 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.438 | 10 | 66 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.25E-9 | 101 | 143 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 7.34E-12 | 101 | 143 | No hit | No description |
SMART | SM00380 | 5.9E-5 | 102 | 147 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 9.638 | 102 | 152 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.0E-7 | 102 | 145 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC GKQVYLGGFD TAQAAARAYD QAAIKFRGVE 60 ADINFLLDDY KEDIGKMSLL SKEELVQVLR RQGAGFVRGS SRFRGVTLHK CGKWEARIGQ 120 LMGKKFVYLG LYDTEMDAAK LVDTISSSFC AH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_43041.3 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK357393 | 0.0 | AK357393.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1052F01. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015642711.1 | 7e-83 | ethylene-responsive transcription factor RAP2-7 | ||||
Swissprot | A0A0N7KMH0 | 6e-84 | AP24_ORYSJ; APETALA2-like protein 4 | ||||
TrEMBL | A0A287XXE5 | 7e-85 | A0A287XXE5_HORVV; Uncharacterized protein | ||||
STRING | OGLUM06G23380.1 | 3e-82 | (Oryza glumipatula) | ||||
STRING | ORUFI06G23930.1 | 3e-82 | (Oryza rufipogon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 1e-68 | AP2 family protein |
Publications ? help Back to Top | |||
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