PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_43041.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | AP2 | ||||||||
Protein Properties | Length: 219aa MW: 24723.4 Da PI: 10.5352 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 22.1 | 3.8e-07 | 23 | 43 | 1 | 21 |
AP2 1 sgykGVrwdkkrgrWvAeIrd 21 s+y+GV++++++grW+++I+ MLOC_43041.2 23 SQYRGVTFYRRTGRWESHIWS 43 78*****************97 PP | |||||||
2 | AP2 | 24.1 | 8.9e-08 | 95 | 125 | 20 | 55 |
AP2 20 rdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 rd + k+++lg f+ta+ Aa+a+++a+ k++g MLOC_43041.2 95 RD------CgKQVYLGGFDTAQAAARAYDQAAIKFRG 125 55......45************************997 PP | |||||||
3 | AP2 | 27.3 | 9e-09 | 168 | 210 | 1 | 47 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaai 47 s+++GV+ +k g+W+A+I +k ++lg ++t+ +Aak+ + MLOC_43041.2 168 SRFRGVTLHK-CGKWEARIGQlM----GKKFVYLGLYDTEMDAAKLVD 210 789*******.7******77733....25**********668998866 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.1E-16 | 24 | 46 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-23 | 24 | 139 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.488 | 24 | 133 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-16 | 97 | 132 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.51E-9 | 97 | 133 | IPR016177 | DNA-binding domain |
SuperFamily | SSF54171 | 8.5E-9 | 168 | 210 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.79E-12 | 168 | 210 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.6E-6 | 169 | 212 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 9.638 | 169 | 219 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.9E-5 | 169 | 214 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
AGAHWTRPLS RTKSRRGPRS RSSQYRGVTF YRRTGRWESH IWSVRHPPSP SKIHGDSRAS 60 NTIITQTVFP RSCIALVYIY LRISVSRPCV LPICRDCGKQ VYLGGFDTAQ AAARAYDQAA 120 IKFRGVEADI NFLLDDYKED IGKMSLLSKE ELVQVLRRQG AGFVRGSSRF RGVTLHKCGK 180 WEARIGQLMG KKFVYLGLYD TEMDAAKLVD TISSSFCAH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_43041.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK357393 | 0.0 | AK357393.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1052F01. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015642711.1 | 5e-76 | ethylene-responsive transcription factor RAP2-7 | ||||
Swissprot | A0A0N7KMH0 | 4e-77 | AP24_ORYSJ; APETALA2-like protein 4 | ||||
TrEMBL | A0A287XXE0 | 1e-124 | A0A287XXE0_HORVV; Uncharacterized protein | ||||
STRING | OGLUM06G23380.1 | 1e-75 | (Oryza glumipatula) | ||||
STRING | MLOC_43041.1 | 2e-76 | (Hordeum vulgare) | ||||
STRING | ORUFI06G23930.1 | 1e-75 | (Oryza rufipogon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 4e-58 | AP2 family protein |
Publications ? help Back to Top | |||
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