PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_43041.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family AP2
Protein Properties Length: 296aa    MW: 32459.5 Da    PI: 8.2096
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_43041.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.6e-182776155
           AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                  s+y+GV++++++grW+++I+d      + k+++lg f+ta+ Aa+a+++a+ k++g
  MLOC_43041.1 27 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAQAAARAYDQAAIKFRG 76
                  78*******************......55************************997 PP
2AP236.31.4e-11119165151
           AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaark 51 
                   s+++GV+ +k  g+W+A+I         +k ++lg ++t+ +Aaka+++a++
  MLOC_43041.1 119 SRFRGVTLHK-CGKWEARIGQlM----GKKFVYLGLYDTEMDAAKAYDKAAL 165
                   789*******.7******77733....25**********77*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.7E-102776IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-162784IPR016177DNA-binding domain
SMARTSM003802.0E-302890IPR001471AP2/ERF domain
PROSITE profilePS5103217.4382884IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-172883IPR001471AP2/ERF domain
CDDcd000181.03E-11119177No hitNo description
SuperFamilySSF541714.77E-16119177IPR016177DNA-binding domain
PfamPF008472.2E-6119169IPR001471AP2/ERF domain
SMARTSM003801.6E-25120183IPR001471AP2/ERF domain
PROSITE profilePS5103214.302120177IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-16120177IPR001471AP2/ERF domain
PRINTSPR003677.3E-5121132IPR001471AP2/ERF domain
PRINTSPR003677.3E-5159179IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
LAGAAGAHWT RPLSRTKSRR GPRSRSSQYR GVTFYRRTGR WESHIWDCGK QVYLGGFDTA  60
QAAARAYDQA AIKFRGVEAD INFLLDDYKE DIGKMSLLSK EELVQVLRRQ GAGFVRGSSR  120
FRGVTLHKCG KWEARIGQLM GKKFVYLGLY DTEMDAAKAY DKAALDCCGE EAMTNFEPKA  180
AVAACDGDLD LHSWGGEPDL ELSLGCSGGG NPSTVTTGDT LRTAAAPGRQ RTSLTFEMPE  240
EEEATAPWHP GRNRSIWIRP SPTSITSGLR CPDGDHRPAF TGSSMLHMVC DAVTNL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:A0A0N7KMH0, ECO:0000250|UniProtKB:P47927}.
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_43041.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3573930.0AK357393.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1052F01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151062.11e-147ethylene-responsive transcription factor RAP2-7-like
SwissprotA0A0N7KMH01e-121AP24_ORYSJ; APETALA2-like protein 4
SwissprotB8B0I81e-121AP24_ORYSI; APETALA2-like protein 4
TrEMBLA0A287XXG40.0A0A287XXG4_HORVV; Uncharacterized protein
STRINGMLOC_43041.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118213439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.23e-72AP2 family protein
Publications ? help Back to Top
  1. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  2. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]