PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_41788.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | C2H2 | ||||||||
Protein Properties | Length: 82aa MW: 9571.96 Da PI: 8.3553 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.1 | 0.0003 | 24 | 49 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y+C+ C++sF k +L H r + MLOC_41788.1 24 YTCSieGCSMSFDMKNELSLHERHiC 49 99*******************99755 PP | |||||||
2 | zf-C2H2 | 17 | 1.7e-05 | 47 | 71 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + Cp Cgk F ++ +L +H +H MLOC_41788.1 47 HICPvdGCGKKFFTHKHLLQHREVH 71 68*******************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.7E-4 | 23 | 46 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 22 | 24 | 46 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 3.79E-6 | 46 | 73 | No hit | No description |
SMART | SM00355 | 0.0059 | 47 | 71 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.741 | 47 | 76 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.9E-8 | 47 | 72 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 49 | 71 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 82 aa Download sequence Send to blast |
MKQLKEARGE ERTPRDDPMR VEGYTCSIEG CSMSFDMKNE LSLHERHICP VDGCGKKFFT 60 HKHLLQHREV HTETTKQLKK AT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6a57_A | 2e-17 | 23 | 73 | 22 | 72 | Lysine-specific demethylase REF6 |
6a58_A | 2e-17 | 23 | 73 | 22 | 72 | Lysine-specific demethylase REF6 |
6a59_A | 2e-17 | 23 | 73 | 22 | 72 | Lysine-specific demethylase REF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Histone demethylase that demethylates 'Lys-27' (H3K27me) of histone H3 with a specific activity for H3K27me3 and H3K27me2. No activity on H3K4me3, H3K9me3, H3K27me1 and H3K36me3. Involved in biotic stress response. May demethylate H3K27me3-marked defense-related genes and increase their basal and induced expression levels during pathogen infection. {ECO:0000269|PubMed:24280387}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_41788.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt stress, abscisic acid (ABA), jasmonic acid (JA), the ethylene precursor ACC and infection by the bacterial pathogen Xanthomonas oryzae pv. oryzae. {ECO:0000269|PubMed:24280387}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020164795.1 | 1e-40 | lysine-specific demethylase JMJ705-like | ||||
Swissprot | Q5N712 | 2e-22 | JM705_ORYSJ; Lysine-specific demethylase JMJ705 | ||||
TrEMBL | A0A287J466 | 4e-50 | A0A287J466_HORVV; Uncharacterized protein | ||||
TrEMBL | A0A287NI62 | 3e-50 | A0A287NI62_HORVV; Uncharacterized protein | ||||
STRING | MLOC_41788.1 | 4e-55 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5346 | 32 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48430.1 | 3e-19 | relative of early flowering 6 |
Publications ? help Back to Top | |||
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