PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_4129.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | B3 | ||||||||
Protein Properties | Length: 233aa MW: 26450.8 Da PI: 10.2918 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 44 | 3.8e-14 | 137 | 228 | 4 | 99 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 v+++++v+ + l+++ k++++h g++ +s + ++g++ +v+l +k+++ +GW +F+++ngL++gD++++++ ++ +e +++v+++r+ MLOC_4129.4 137 VMKKANVTGRFTLSMSMKYVRTHLGDEVRS---MWLERDGERCQVTL--GRKPQANRVVGGWVKFARDNGLRTGDVCLLERLRHrEECTMKVHIVRR 228 6888999999*************8887776...55668*********..9999999999*********************775559999****9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.5E-15 | 129 | 227 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.34E-15 | 129 | 227 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.60E-16 | 132 | 227 | No hit | No description |
SMART | SM01019 | 0.0011 | 134 | 229 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.164 | 134 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.5E-12 | 136 | 228 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MCTMEVHIIH AKDFDRPSQI GGRNVKRRCK ETITKTVEPS HSRLQLVQMQ LHNASVEDSY 60 SRPQPMEMQS PSTERQIRVE TVNSCPGNEG DSSMSEDSVT LTGCMGVHLR SIPLIQKKLV 120 KQKVDLIGSK IPICVLVMKK ANVTGRFTLS MSMKYVRTHL GDEVRSMWLE RDGERCQVTL 180 GRKPQANRVV GGWVKFARDN GLRTGDVCLL ERLRHREECT MKVHIVRRVK LAG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_4129.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020174612.1 | 1e-139 | putative B3 domain-containing protein Os08g0325100 | ||||
TrEMBL | M0W2H8 | 1e-168 | M0W2H8_HORVV; Uncharacterized protein | ||||
STRING | MLOC_4129.1 | 1e-169 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 8e-10 | B3 family protein |