PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_4129.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 527aa    MW: 59862.2 Da    PI: 8.786
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_4129.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.67.1e-16211302196
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 
                  f+ v+ + +v+++  l+++kk++++h g+ke+s  +   ++ g++W+v++  + +++   + +GW++Fvk+n++++gD+++F+l +  +  ++ v++
  MLOC_4129.2 211 FVAVMRRFNVTRTFTLTFSKKYVNTHVGDKERS--VC-LQRFGKRWDVQF--SSSREVKRIVSGWRKFVKDNDVETGDICIFELLKIdEMCTMEVHI 302
                  556677778999999***********8888886..55.557*********..6666667789*********************76443544566666 PP
2B341.91.8e-13431522499
                  E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
           B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                  v+++++v+ +  l+++ k++++h g++ +s   +   ++g++ +v+l   +k+++    +GW +F+++ngL++gD++++++ ++ +e +++v+++r+
  MLOC_4129.2 431 VMKKANVTGRFTLSMSMKYVRTHLGDEVRS---MWLERDGERCQVTL--GRKPQANRVVGGWVKFARDNGLRTGDVCLLERLRHrEECTMKVHIVRR 522
                  6788999999*************8887776...55668*********..9999999999*********************775559999***99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.0E-19203305IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-19206295IPR015300DNA-binding pseudobarrel domain
CDDcd100178.34E-18209303No hitNo description
PROSITE profilePS5086313.408211306IPR003340B3 DNA binding domain
SMARTSM010193.6E-7211306IPR003340B3 DNA binding domain
PfamPF023627.5E-14211303IPR003340B3 DNA binding domain
SuperFamilySSF1019361.11E-14423521IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-14423521IPR015300DNA-binding pseudobarrel domain
CDDcd100171.36E-15426521No hitNo description
PROSITE profilePS508639.164428523IPR003340B3 DNA binding domain
SMARTSM010190.0011428523IPR003340B3 DNA binding domain
PfamPF023621.6E-11430522IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MEVQSPIENA NYPEGRPQPM GMQSPTENAD PSHGHPQPMR MQPPTEKLDD PVGFSRPTEM  60
HPPTENVNHL FGHSQPMQMQ PSTEVVDHFA QMQPSTEAVD HSSGHAQTMQ MQPASEVVDH  120
SNGHAQTMQM QLLCRPTKLR QSKLQWDYSS KGNKTATSPS DTPGDSLSSE HDIEGCTSPR  180
YTLTHNTRLN TVQKEEVDEK VKSIHKDNPI FVAVMRRFNV TRTFTLTFSK KYVNTHVGDK  240
ERSVCLQRFG KRWDVQFSSS REVKRIVSGW RKFVKDNDVE TGDICIFELL KIDEMCTMEV  300
HIIHAKDFDR PSQIGGRNVK RRCKETITKT VEPSHSRLQL VQMQLHNASV EDSYSRPQPM  360
EMQSPSTERQ IRVETVNSCP GNEGDSSMSE DSVTLTGCMG VHLRSIPLIQ KKLVKQKVDL  420
IGSKIPICVL VMKKANVTGR FTLSMSMKYV RTHLGDEVRS MWLERDGERC QVTLGRKPQA  480
NRVVGGWVKF ARDNGLRTGD VCLLERLRHR EECTMKVHIV RRVKLAG
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_4129.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020174612.10.0putative B3 domain-containing protein Os08g0325100
TrEMBLM0W2H80.0M0W2H8_HORVV; Uncharacterized protein
STRINGMLOC_4129.10.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.11e-08B3 family protein