PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_41261.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | FAR1 | ||||||||
Protein Properties | Length: 112aa MW: 12931.8 Da PI: 9.1904 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 42.8 | 1.8e-13 | 25 | 71 | 43 | 90 |
FAR1 43 eekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +++kkt+k+r++++ +tgCkak++vk+ dg+wev++++ +HnH+l+ MLOC_41261.1 25 SKTKKTTKKRKRHTILQTGCKAKMVVKLI-DGRWEVIHFVGKHNHPLV 71 445557899999*****************.****************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.2E-11 | 25 | 71 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 112 aa Download sequence Send to blast |
MLDEIVDETK DDDQYEDIVF LDDDSKTKKT TKKRKRHTIL QTGCKAKMVV KLIDGRWEVI 60 HFVGKHNHPL VGTKYLRSHQ GIPVEEKKFL THPHNCNLTT GLNNTPSPLQ RA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_41261.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020158092.1 | 1e-25 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A287DZN6 | 3e-50 | A0A287DZN6_HORVV; Uncharacterized protein | ||||
STRING | MLOC_41261.1 | 3e-78 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9528 | 8 | 43 |