PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MLOC_4091.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
|
||||||||
Family | LSD | ||||||||
Protein Properties | Length: 84aa MW: 8688.85 Da PI: 7.1794 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 30.2 | 7.3e-10 | 1 | 17 | 9 | 25 |
zf-LSD1 9 sYPrGApsVRCalCdtV 25 +YP GApsV+Ca+Cd++ MLOC_4091.1 1 MYPHGAPSVKCAICDFI 17 9**************86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 1.6E-5 | 1 | 18 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 6.5E-8 | 1 | 17 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 84 aa Download sequence Send to blast |
MYPHGAPSVK CAICDFITNT GINAMSPAPC PRPTSNESAY NASSASVPTS QPQNVTVVVE 60 NPMTVDEKGK LVSNVVVGIT PGKN |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | MLOC_4091.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU545234 | 1e-140 | EU545234.1 Hordeum vulgare subsp. vulgare clone SMEb0007a07 LSD1-like protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020196161.1 | 2e-51 | protein LOL3-like isoform X1 | ||||
Refseq | XP_020196162.1 | 2e-51 | protein LOL3-like isoform X2 | ||||
Swissprot | Q6ASS2 | 2e-34 | LOL3_ORYSJ; Protein LOL3 | ||||
TrEMBL | A0A287SA53 | 8e-53 | A0A287SA53_HORVV; Uncharacterized protein | ||||
TrEMBL | B2CR51 | 2e-52 | B2CR51_HORVV; LSD1-like protein | ||||
STRING | MLOC_4091.1 | 5e-54 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1347 | 38 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G20380.7 | 8e-18 | LSD family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|