PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_40602.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | NAC | ||||||||
Protein Properties | Length: 100aa MW: 10678.9 Da PI: 6.2329 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 36.8 | 1.2e-11 | 13 | 95 | 5 | 81 |
NAM 5 frFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksg 81 +r +Pt+ e v++yL + +++++l+ +e i++v+i +eP+dL + + +a++ + +fF+++++k+ ++ ++ r++ g MLOC_40602.2 13 YRLNPTEVEAVTYYLPRLLSSDTLHGAEKlIHDVEISGCEPKDLAAryapapQ-AAGSGDRFFFTTSKSKNGSKLQSVRSAGGG 95 699********************7766655**************853555322.2244478*******9999999988876655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 12.971 | 9 | 100 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 5.1E-10 | 13 | 95 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 100 aa Download sequence Send to blast |
MEGLDVDGIF QHYRLNPTEV EAVTYYLPRL LSSDTLHGAE KLIHDVEISG CEPKDLAARY 60 APAPQAAGSG DRFFFTTSKS KNGSKLQSVR SAGGGTGACC |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_40602.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK373272 | 1e-155 | AK373272.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3025L12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020152646.1 | 1e-52 | uncharacterized protein LOC109737913 | ||||
Refseq | XP_020159480.1 | 1e-52 | uncharacterized protein LOC109744740 | ||||
TrEMBL | A0A287W6B0 | 2e-60 | A0A287W6B0_HORVV; Uncharacterized protein | ||||
STRING | MLOC_40602.1 | 9e-66 | (Hordeum vulgare) |