PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_3955.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ARR-B
Protein Properties Length: 623aa    MW: 67707 Da    PI: 6.619
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_3955.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.66e-28202255155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  kpr++W+ eLH++Fv av+qL G++kA+Pk+il+lm+v+ +t+e+v+SHLQkYRl
  MLOC_3955.1 202 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKKILDLMNVENITRENVASHLQKYRL 255
                  79*******************.********************************8 PP
2Response_reg79.89.2e-27241321109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl vdD+p+ +++l+++l++ +y +v+++ ++  al++l+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++a+ge +++ + +  Ga 
   MLOC_3955.1  24 VLAVDDDPTCLKVLENLLRRCDY-HVTTTGQAATALRMLRENKdqFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGETQTVMKGITHGAC 118
                   799********************.***************888889*******************87754.558************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+  e+l +
   MLOC_3955.1 119 DYLLKPVRLEQLKT 132
                   ***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363926.5E-1841623IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23001.0E-4321166No hitNo description
SuperFamilySSF521724.55E-3621142IPR011006CheY-like superfamily
SMARTSM004482.9E-3322134IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.90523138IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.5E-2424133IPR001789Signal transduction response regulator, receiver domain
CDDcd001568.91E-2925138No hitNo description
PROSITE profilePS5129411.189199258IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-29199260IPR009057Homeodomain-like
SuperFamilySSF466896.63E-20200259IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-24202255IPR006447Myb domain, plants
PfamPF002492.2E-6204254IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 623 aa     Download sequence    Send to blast
MTVEGRVGGG DGGGKDKFPV GMRVLAVDDD PTCLKVLENL LRRCDYHVTT TGQAATALRM  60
LRENKDQFDL VISDVHMPDM DGFKLLELVG LEMDLPVIML SANGETQTVM KGITHGACDY  120
LLKPVRLEQL KTIWQHVIRR NTKNRGSDND DASQKGPNAE GENGGANRNK RQSRRDRDEN  180
GDDGDDSDEN SNDNGDSSSQ KKPRVVWSVE LHRKFVAAVN QLGIDKAVPK KILDLMNVEN  240
ITRENVASHL QKYRLYLKRM SMDASRQANL VAALGGRNPA YSNMNSMDVF RHYNNAYGRY  300
RPVPTSTHSQ SNNLVARMNS PSAYGMHGLL SPQSQPLHLG HAQNNNLGTS LNDLGVNNGN  360
LIRTAHMSTM VTGTSGNTFA NISNGAQLAP TNRAVQPLES SNRQHLGRIN SSSTDSFSSF  420
TSDSPHFPDL GRSSNTWQTA VPSNIQQLGQ NGSMSQASFH GNGPRMEPVS SYAPPSNQIT  480
SLGNEMQNQV APLASNTLPM VFNQGAAPFT FGNSTNSREA HNSNLAFSNS GINTSLPNLR  540
IDNSIMPRQT LDGGNTGGVP SLQDGKIDQQ AVGNQLNYSN NDLVGTSGLQ RELSGGLDDI  600
VVDMFRPDND TGGIFIDTDW GLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-25198261164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_3955.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3637600.0AK363760.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2018L02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158305.10.0two-component response regulator ORR24
SwissprotQ6H8050.0ORR24_ORYSJ; Two-component response regulator ORR24
TrEMBLF2DIP20.0F2DIP2_HORVV; Two-component response regulator
STRINGMLOC_3955.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81473447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-106response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]