PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_39233.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family FAR1
Protein Properties Length: 538aa    MW: 60194.3 Da    PI: 6.8862
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_39233.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR128.93.7e-091701090
          FAR1 10 vGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
                  +GF +r  ks+++ + g   +++ +C + gk ++  k+           r++C+a +++ +++d+ w+vt+ ++ HnH+++
  MLOC_39233.2  1 MGFGIRYGKSRRNAKGG-KCMQEITCVNAGKLNTGGKS----------RRCECTALIRLLRTDDNGWYVTQHRKVHNHAFS 70
                  7***********98877.667899*******9998777..........9*****************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.2E-5170IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MGFGIRYGKS RRNAKGGKCM QEITCVNAGK LNTGGKSRRC ECTALIRLLR TDDNGWYVTQ  60
HRKVHNHAFS TTYGNKVHWP SHKHLDKYTR DLVRQLRHNN VNLGVYDTIA SFFGRMENVP  120
FNKRSIRTLC GEVIREQADD NVRKTMETAA ASGERPENHT LEETTLNCLG IASTTIDSAN  180
APVDPLRYPE KDDTHWNAEA GRLADLLLAF GDCHLVLKSC SYDDLINSNG TMSGLEEAVK  240
AVTPHLQQGI FGDLWSRAHN SGGVVSAQVL TIKDLFRFTR WLTTTTGQHN LRCAQQRVKL  300
VNSGKAVLEP EQIALLHLYQ AENDEYSVKI NKLQGERDAE IAHYMVKIDE ARKSFEVSIE  360
AAKEHYPVSA SYVALDSNEL RGQCWTMYLA QCRKEAKDLN AKASDIVEKY GPEIIQRHLF  420
EFCSQETNRE ALLKYAQTKV NNLKEAGDAR GENTLHDYMT LLDIEKAYAL LAAEEQIANG  480
PVTCGGSEDA DRGSRNNATA RDEAAEGARG DAQGGGEGAS EDPPPQKRQR NNQDYVWW
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_39233.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3588740.0AK358874.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1084N18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188421.10.0uncharacterized protein LOC109774115
TrEMBLM0W0560.0M0W056_HORVV; Uncharacterized protein
STRINGMLOC_39233.10.0(Hordeum vulgare)