PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_39001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | C2H2 | ||||||||
Protein Properties | Length: 182aa MW: 19306 Da PI: 8.3132 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.8 | 0.00075 | 38 | 60 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+++F++ L H +H MLOC_39001.1 38 FVCKTCHRVFPSFQALGGHRASH 60 89**********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.17E-7 | 37 | 98 | No hit | No description |
Pfam | PF13912 | 1.6E-12 | 37 | 62 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.182 | 38 | 65 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.2 | 38 | 60 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 40 | 60 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.3E-8 | 76 | 100 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 2.9 | 76 | 98 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 78 | 98 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MNRFAFEERA RVLLLVSREQ AMPVPVAVRG DRAREQAFVC KTCHRVFPSF QALGGHRASH 60 KKPRLDGDGG LKPKMHGCSV CGLEFAVGQA LGGHMRRHRA MVAGGHGVTA AAARAETINN 120 LDDSGNAAVV VGSGGGMKRG LWLDLNHPPC DDGDCGHDAA AAGYTFHQFL DAGTMPVDCV 180 GY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor involved in light acclimation, cold and oxidative stress responses. May regulate a collection of transcripts involved in response to high-light, cold and oxidative stress. {ECO:0000269|PubMed:11069694, ECO:0000269|PubMed:14722088, ECO:0000269|PubMed:15634197, ECO:0000269|PubMed:16183833}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_39001.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By H(2)O(2), cold, drought, cold or heat stresses, wounding, cucumber mosaic virus (CMV), exposure to high-intensity light and low-oxygen conditions in roots. {ECO:0000269|PubMed:12368499, ECO:0000269|PubMed:14722088, ECO:0000269|PubMed:15634197, ECO:0000269|PubMed:16183833, ECO:0000269|PubMed:18201973, ECO:0000269|PubMed:18922600}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ151539 | 0.0 | DQ151539.1 Hordeum vulgare subsp. vulgare cultivar Morex HvZFP16-1 (ZFP16-1) gene, complete cds. | |||
GenBank | DQ151540 | 0.0 | DQ151540.1 Hordeum vulgare subsp. vulgare cultivar Optic ZFP16-1 (ZFP16-1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020201498.1 | 1e-102 | zinc finger protein ZAT12-like | ||||
Swissprot | Q42410 | 6e-23 | ZAT12_ARATH; Zinc finger protein ZAT12 | ||||
TrEMBL | Q2VGB8 | 1e-130 | Q2VGB8_HORVV; HvZFP16-1 | ||||
STRING | MLOC_39001.1 | 1e-131 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP501 | 37 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59820.1 | 4e-23 | C2H2 family protein |