PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_38921.7

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

FAR1

Protein Properties

Length: 661aa MW: 76028.7 Da PI: 7.0587

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_38921.7	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	76.6	4.9e-24	33	122	2	89
FAR1 2 fYneYAkevGFsvrkskskkskr.ngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fYneYA+++GF r+ +s++sk ++ +++r+fvCs+eg ++++ + + +++r+r++ r gC+a+++v +e +++w+v+kle+ HnH+l MLOC_38921.7 33 FYNEYARHLGFPFRVGRSRRSKGaEEVVVMRRFVCSREGMYRKKDPSsgEATKKRERMSMREGCNAMMEVVRE-SNHWVVSKLETAHNHNL 122 *******************651566789*****9888877767789999************99.9************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.3E-21	33	122	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.1E-27	215	306	IPR018289	MULE transposase domain
PROSITE profile	PS50966	11.029	494	530	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.0E-9	496	527	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.1E-4	505	532	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 661 aa Download sequence Send to blast
MEQDAMKDFV PPEDPKEPLL GMTFESDEAA KTFYNEYARH LGFPFRVGRS RRSKGAEEVV 60 VMRRFVCSRE GMYRKKDPSS GEATKKRERM SMREGCNAMM EVVRESNHWV VSKLETAHNH 120 NLGTCSRVGY LRDRGLLDAS NKITMMGSNG VPFLRQNVLG EGGDSQGLLD YLKKMQANDP 180 AFFHAIQVDK NSCLMNVFWA DSRAKLAYQH FGDAVTFDTT YKKNKYMMPF VTFSGVNHHL 240 HRVMFGCALL MEETECSFVW LFETWLAAMS GKAPCSLVTD QNRAMKAAIG KVFPHTCHRF 300 CKWLILSRTK QKLAHIYSEH PTLSDELESC IIESETINTF ETVWRSILDT YDLRNNTWLQ 360 AIYNIRQKWV PLYLMDTFCA EISKAQKLET MNDFYKKYFS TKVTLEVFLT QFDLSIETHY 420 EEEAKADMDT SLNLMRTKTA SPMEKQAART YTKAVFSKFQ EEFTESLAYI IQKTKDDCIS 480 EYNIMKDENS SDTFCVTYNA SNKMAKCSCK YFEFSGILCR HILGVFIIAD PHLLPPDYFL 540 KRWTRKARDG GLLEYNCKNH QDDVCQSITS RYDALCADAI RCAEKGSGSE TVYKAAKDIL 600 QKAYEEIITY ERNPARISQR DAININEDVM VDDSMTDQSL PDSRQKVTNL LGQFLGSSWS 660 P

Sequence ? help Back to Top

Protein Sequence Length: 661 aa Download sequence Send to blast

MEQDAMKDFV PPEDPKEPLL GMTFESDEAA KTFYNEYARH LGFPFRVGRS RRSKGAEEVV  60
VMRRFVCSRE GMYRKKDPSS GEATKKRERM SMREGCNAMM EVVRESNHWV VSKLETAHNH  120
NLGTCSRVGY LRDRGLLDAS NKITMMGSNG VPFLRQNVLG EGGDSQGLLD YLKKMQANDP  180
AFFHAIQVDK NSCLMNVFWA DSRAKLAYQH FGDAVTFDTT YKKNKYMMPF VTFSGVNHHL  240
HRVMFGCALL MEETECSFVW LFETWLAAMS GKAPCSLVTD QNRAMKAAIG KVFPHTCHRF  300
CKWLILSRTK QKLAHIYSEH PTLSDELESC IIESETINTF ETVWRSILDT YDLRNNTWLQ  360
AIYNIRQKWV PLYLMDTFCA EISKAQKLET MNDFYKKYFS TKVTLEVFLT QFDLSIETHY  420
EEEAKADMDT SLNLMRTKTA SPMEKQAART YTKAVFSKFQ EEFTESLAYI IQKTKDDCIS  480
EYNIMKDENS SDTFCVTYNA SNKMAKCSCK YFEFSGILCR HILGVFIIAD PHLLPPDYFL  540
KRWTRKARDG GLLEYNCKNH QDDVCQSITS RYDALCADAI RCAEKGSGSE TVYKAAKDIL  600
QKAYEEIITY ERNPARISQR DAININEDVM VDDSMTDQSL PDSRQKVTNL LGQFLGSSWS  660
P

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_38921.7

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020193510.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_020193511.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_020193512.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A453JWF3	0.0	A0A453JWF3_AEGTS; Uncharacterized protein
STRING	MLOC_38921.3	0.0	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-150	FAR1-related sequence 5