PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_38921.2

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

FAR1

Protein Properties

Length: 713aa MW: 81346.6 Da PI: 6.3722

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_38921.2	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	76.4	5.5e-24	85	174	2	89
FAR1 2 fYneYAkevGFsvrkskskkskr.ngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fYneYA+++GF r+ +s++sk ++ +++r+fvCs+eg ++++ + + +++r+r++ r gC+a+++v +e +++w+v+kle+ HnH+l MLOC_38921.2 85 FYNEYARHLGFPFRVGRSRRSKGaEEVVVMRRFVCSREGMYRKKDPSsgEATKKRERMSMREGCNAMMEVVRE-SNHWVVSKLETAHNHNL 174 *******************651566789*****9888877767789999************99.9************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.8E-21	85	174	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.3E-27	267	358	IPR018289	MULE transposase domain
PROSITE profile	PS50966	11.029	546	582	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.4E-9	548	579	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.1E-4	557	584	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 713 aa Download sequence Send to blast
MEAARSEGDE LIADYVDCLM SLDTNARSVQ NDNLILGGPV IEAGIAASVG GIMEQDAMKD 60 FVPPEDPKEP LLGMTFESDE AAKTFYNEYA RHLGFPFRVG RSRRSKGAEE VVVMRRFVCS 120 REGMYRKKDP SSGEATKKRE RMSMREGCNA MMEVVRESNH WVVSKLETAH NHNLGTCSRV 180 GYLRDRGLLD ASNKITMMGS NGVPFLRQNV LGEGGDSQGL LDYLKKMQAN DPAFFHAIQV 240 DKNSCLMNVF WADSRAKLAY QHFGDAVTFD TTYKKNKYMM PFVTFSGVNH HLHRVMFGCA 300 LLMEETECSF VWLFETWLAA MSGKAPCSLV TDQNRAMKAA IGKVFPHTCH RFCKWLILSR 360 TKQKLAHIYS EHPTLSDELE SCIIESETIN TFETVWRSIL DTYDLRNNTW LQAIYNIRQK 420 WVPLYLMDTF CAEISKAQKL ETMNDFYKKY FSTKVTLEVF LTQFDLSIET HYEEEAKADM 480 DTSLNLMRTK TASPMEKQAA RTYTKAVFSK FQEEFTESLA YIIQKTKDDC ISEYNIMKDE 540 NSSDTFCVTY NASNKMAKCS CKYFEFSGIL CRHILGVFII ADPHLLPPDY FLKRWTRKAR 600 DGGLLEYNCK NHQDDVCQSI TSRYDALCAD AIRCAEKGSG SETVYKAAKD ILQKAYEEII 660 TYERNPARIS QRDAININED VMVDDSMTDQ SLPDSRQKVT NLLGQFLGSS WSP

Sequence ? help Back to Top

Protein Sequence Length: 713 aa Download sequence Send to blast

MEAARSEGDE LIADYVDCLM SLDTNARSVQ NDNLILGGPV IEAGIAASVG GIMEQDAMKD  60
FVPPEDPKEP LLGMTFESDE AAKTFYNEYA RHLGFPFRVG RSRRSKGAEE VVVMRRFVCS  120
REGMYRKKDP SSGEATKKRE RMSMREGCNA MMEVVRESNH WVVSKLETAH NHNLGTCSRV  180
GYLRDRGLLD ASNKITMMGS NGVPFLRQNV LGEGGDSQGL LDYLKKMQAN DPAFFHAIQV  240
DKNSCLMNVF WADSRAKLAY QHFGDAVTFD TTYKKNKYMM PFVTFSGVNH HLHRVMFGCA  300
LLMEETECSF VWLFETWLAA MSGKAPCSLV TDQNRAMKAA IGKVFPHTCH RFCKWLILSR  360
TKQKLAHIYS EHPTLSDELE SCIIESETIN TFETVWRSIL DTYDLRNNTW LQAIYNIRQK  420
WVPLYLMDTF CAEISKAQKL ETMNDFYKKY FSTKVTLEVF LTQFDLSIET HYEEEAKADM  480
DTSLNLMRTK TASPMEKQAA RTYTKAVFSK FQEEFTESLA YIIQKTKDDC ISEYNIMKDE  540
NSSDTFCVTY NASNKMAKCS CKYFEFSGIL CRHILGVFII ADPHLLPPDY FLKRWTRKAR  600
DGGLLEYNCK NHQDDVCQSI TSRYDALCAD AIRCAEKGSG SETVYKAAKD ILQKAYEEII  660
TYERNPARIS QRDAININED VMVDDSMTDQ SLPDSRQKVT NLLGQFLGSS WSP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_38921.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020193510.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_020193511.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_020193512.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A453JWF3	0.0	A0A453JWF3_AEGTS; Uncharacterized protein
STRING	MLOC_38921.3	0.0	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-150	FAR1-related sequence 5