PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_38864.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 304aa    MW: 33319.1 Da    PI: 4.9243
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_38864.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.2e-05273295123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   y+C++Cg++F ++  +  H+++H
  MLOC_38864.1 273 YTCKICGRTFITSQAYGGHMSSH 295
                   9*******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.39E-5270300No hitNo description
PfamPF121712.6E-5272301IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.803273300IPR007087Zinc finger, C2H2
SMARTSM003550.0099273295IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280275295IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MDPNISYPNK LKSSESDAYI SPLHEVLRGT IAMPVSNDTL SFESLPLDLP SAVNSSPAID  60
APPEGAMISV NDSSMMPHQM NVGLAPLPPQ LSDTISNPLS MVNTITSQYY NEEIHQDGYE  120
MVWHEDILSN PLSNYVDSYH HMNTSSMESP SFTSSLRADP NSIVYTHLNT TRALEDGSIS  180
EMPTRNGFEV NSQPYAFLCS SENIDPFTLN TILQQQNMQN GRLRYDASYG APAPISPLMM  240
SSHVQTEDKT PPVGPNGIFD SAILHDSTTS GKYTCKICGR TFITSQAYGG HMSSHAKAKK  300
HLHS
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_38864.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLM0VZD70.0M0VZD7_HORVV; Uncharacterized protein
STRINGMLOC_38864.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11492612