PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_38822.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 267aa    MW: 29242.2 Da    PI: 10.264
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_38822.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B394.28.9e-3049149190
                   EEEE-..-HHHHTT-EE--HHH.HTT............---....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkke..esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                   f+k+ tpsdv+k++rlv+pk++ae+h                   +++ l + d +g++W+++++y+++s++yvltkGW++Fvk++gL +gD v F+
  MLOC_38822.1  49 FDKTVTPSDVGKLNRLVIPKQHAEKHfplqlpsasaavP---GecKGVLLNFDDATGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDAVEFY 142
                   89***************************8887776652...144889************************************************* PP

                   E-SSSEE CS
            B3  84 ldgrsef 90 
                   +  + + 
  MLOC_38822.1 143 RAASGNN 149
                   6654443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.7E-4041167IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-3046156IPR015300DNA-binding pseudobarrel domain
CDDcd100179.54E-2747143No hitNo description
PROSITE profilePS5086313.29649159IPR003340B3 DNA binding domain
PfamPF023621.2E-2649152IPR003340B3 DNA binding domain
SMARTSM010192.4E-2049161IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MLRKHIYPDE LAQHKRAFFF AAASSPTSSS SPLASPAPSA AAARREHLFD KTVTPSDVGK  60
LNRLVIPKQH AEKHFPLQLP SASAAVPGEC KGVLLNFDDA TGKVWRFRYS YWNSSQSYVL  120
TKGWSRFVKE KGLHAGDAVE FYRAASGNNQ LFIDCKLRSK STTTTTSVNS EAAPSPAPVT  180
RTVRLFGVDL LIAPAARHAH EHEDYGMAKT NKRTMEASVA APTPAHAVWK KRCVDFALTY  240
RLATTPQCPR SRDQLEGVQA AGSTFAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-514616111120DNA-binding protein RAV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_38822.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3719410.0AK371941.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2143K20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020159691.11e-142AP2/ERF and B3 domain-containing protein Os05g0549800-like
SwissprotQ8RZX97e-83Y1934_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0693400
TrEMBLA0A287GHY70.0A0A287GHY7_HORVV; Uncharacterized protein
TrEMBLF2E7170.0F2E717_HORVV; Predicted protein
STRINGMLOC_38822.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2516134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.29e-61related to ABI3/VP1 2