PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_38704.4
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family CAMTA
Protein Properties Length: 602aa    MW: 67366.6 Da    PI: 4.8102
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_38704.4genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1176.63.2e-55201363118
          CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrc 98 
                   ke ++rwl+++ei++iL+n+++++++ e+++ p sgsl+L++rk++r+frkDG++w+kkkdgktv+E+he+LK g+++vl+cyYah+een +fqrr+
  MLOC_38704.4  20 KEaQTRWLRPTEICEILKNYRNFRIAPEPPNMPASGSLFLFDRKVLRFFRKDGHNWRKKKDGKTVKEAHERLKSGSIDVLHCYYAHGEENINFQRRS 116
                   5559********************************************************************************************* PP

          CG-1  99 ywlLeeelekivlvhylevk 118
                   yw+Lee++ +ivlvhylevk
  MLOC_38704.4 117 YWMLEEDYMHIVLVHYLEVK 136
                   *****************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.63915141IPR005559CG-1 DNA-binding domain
SMARTSM010763.3E-7418136IPR005559CG-1 DNA-binding domain
PfamPF038591.9E-4821135IPR005559CG-1 DNA-binding domain
CDDcd001024.21E-6467554No hitNo description
PfamPF018336.9E-8467552IPR002909IPT domain
Gene3DG3DSA:2.60.40.106.2E-7467554IPR013783Immunoglobulin-like fold
SuperFamilySSF812961.34E-18468553IPR014756Immunoglobulin E-set
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MAEGRRYGIA PQLDMEQILK EAQTRWLRPT EICEILKNYR NFRIAPEPPN MPASGSLFLF  60
DRKVLRFFRK DGHNWRKKKD GKTVKEAHER LKSGSIDVLH CYYAHGEENI NFQRRSYWML  120
EEDYMHIVLV HYLEVKAGKS SSRTRGHDSM LQGAYVDSPL SMPSQTTDGE SSLSGQASEY  180
EAESDIYSGG AGYHSISRMQ QHENGGGSVI DGSVVSSYGP ASSVGNHQGL QATAPNTGFY  240
SHYQNNLPVI HNESNLGITF NGPSTQFDLS SWNEMTKLDK GTHQLPPYQS HVPSEQPPFT  300
EGPGIVSFTF DEVYNNGLDD GHANTDKEPL WQLPSANDGT TTEFQLPSAT DGITTEFQLP  360
SATDGTFGTV DSFEQNSKLL EEAINFPVLK TQSSNLSDIL KDSFKKSDSF TRWMSKELAE  420
VDDSQVKSSS GLYWNSEDAD NIIGASGRDQ LDQFTLDPMV AQDQLFSITD FFPSWTYAGS  480
KTRVLVTGRF LTSDEVIKLK WSCMFGEVEV PAEILVDGTL RCYSPSHKPG RVPFYVTCSN  540
RLACSEVREF EYRPSDSQYM DAPSPHGATN KIYLQARLDE LLSLGQDEQN EFQAALSNPT  600
KE
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_38704.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3652100.0AK365210.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2032B14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020179696.10.0calmodulin-binding transcription activator 3-like isoform X2
TrEMBLA0A287PSY50.0A0A287PSY5_HORVV; Uncharacterized protein
STRINGMLOC_38704.10.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.21e-131Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains