PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_38704.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | CAMTA | ||||||||
Protein Properties | Length: 589aa MW: 66004.1 Da PI: 4.8914 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 176.6 | 3.1e-55 | 20 | 136 | 3 | 118 |
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrc 98 ke ++rwl+++ei++iL+n+++++++ e+++ p sgsl+L++rk++r+frkDG++w+kkkdgktv+E+he+LK g+++vl+cyYah+een +fqrr+ MLOC_38704.3 20 KEaQTRWLRPTEICEILKNYRNFRIAPEPPNMPASGSLFLFDRKVLRFFRKDGHNWRKKKDGKTVKEAHERLKSGSIDVLHCYYAHGEENINFQRRS 116 5559********************************************************************************************* PP CG-1 99 ywlLeeelekivlvhylevk 118 yw+Lee++ +ivlvhylevk MLOC_38704.3 117 YWMLEEDYMHIVLVHYLEVK 136 *****************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 80.639 | 15 | 141 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 3.3E-74 | 18 | 136 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 1.8E-48 | 21 | 135 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF01833 | 6.7E-8 | 454 | 539 | IPR002909 | IPT domain |
CDD | cd00102 | 4.09E-6 | 454 | 541 | No hit | No description |
Gene3D | G3DSA:2.60.40.10 | 6.0E-7 | 454 | 541 | IPR013783 | Immunoglobulin-like fold |
SuperFamily | SSF81296 | 1.3E-18 | 455 | 540 | IPR014756 | Immunoglobulin E-set |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 589 aa Download sequence Send to blast |
MAEGRRYGIA PQLDMEQILK EAQTRWLRPT EICEILKNYR NFRIAPEPPN MPASGSLFLF 60 DRKVLRFFRK DGHNWRKKKD GKTVKEAHER LKSGSIDVLH CYYAHGEENI NFQRRSYWML 120 EEDYMHIVLV HYLEVKAGKS SSRTRGHDSM LQGAYVDSPL SMPSQTTDGE SSLSGQASEY 180 EAESDIYSGG AGYHSISRMQ QHENGGGSVI DGSVVSSYGP ASSVGNHQGL QATAPNTGFY 240 SHYQNNLPVI HNESNLGITF NGPSTQFDLS SWNEMTKLDK GTHQLPPYQS HVPSEQPPFT 300 EGPGIVSFTF DEVYNNGLDD GHANTDKEPL WQLPSATDGI TTEFQLPSAT DGTFGTVDSF 360 EQNSKLLEEA INFPVLKTQS SNLSDILKDS FKKSDSFTRW MSKELAEVDD SQVKSSSGLY 420 WNSEDADNII GASGRDQLDQ FTLDPMVAQD QLFSITDFFP SWTYAGSKTR VLVTGRFLTS 480 DEVIKLKWSC MFGEVEVPAE ILVDGTLRCY SPSHKPGRVP FYVTCSNRLA CSEVREFEYR 540 PSDSQYMDAP SPHGATNKIY LQARLDELLS LGQDEQNEFQ AALSNPTKE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_38704.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK365210 | 0.0 | AK365210.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2032B14. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020179696.1 | 0.0 | calmodulin-binding transcription activator 3-like isoform X2 | ||||
TrEMBL | A0A287PS34 | 0.0 | A0A287PS34_HORVV; Uncharacterized protein | ||||
STRING | MLOC_38704.1 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64220.2 | 1e-131 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |