PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_38704.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | CAMTA | ||||||||
Protein Properties | Length: 603aa MW: 67437.6 Da PI: 4.8102 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 176.6 | 3.3e-55 | 20 | 136 | 3 | 118 |
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrc 98 ke ++rwl+++ei++iL+n+++++++ e+++ p sgsl+L++rk++r+frkDG++w+kkkdgktv+E+he+LK g+++vl+cyYah+een +fqrr+ MLOC_38704.1 20 KEaQTRWLRPTEICEILKNYRNFRIAPEPPNMPASGSLFLFDRKVLRFFRKDGHNWRKKKDGKTVKEAHERLKSGSIDVLHCYYAHGEENINFQRRS 116 5559********************************************************************************************* PP CG-1 99 ywlLeeelekivlvhylevk 118 yw+Lee++ +ivlvhylevk MLOC_38704.1 117 YWMLEEDYMHIVLVHYLEVK 136 *****************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 80.639 | 15 | 141 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 3.3E-74 | 18 | 136 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 1.9E-48 | 21 | 135 | IPR005559 | CG-1 DNA-binding domain |
CDD | cd00102 | 4.22E-6 | 468 | 555 | No hit | No description |
Gene3D | G3DSA:2.60.40.10 | 6.2E-7 | 468 | 555 | IPR013783 | Immunoglobulin-like fold |
Pfam | PF01833 | 6.9E-8 | 468 | 553 | IPR002909 | IPT domain |
SuperFamily | SSF81296 | 1.36E-18 | 469 | 554 | IPR014756 | Immunoglobulin E-set |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 603 aa Download sequence Send to blast |
MAEGRRYGIA PQLDMEQILK EAQTRWLRPT EICEILKNYR NFRIAPEPPN MPASGSLFLF 60 DRKVLRFFRK DGHNWRKKKD GKTVKEAHER LKSGSIDVLH CYYAHGEENI NFQRRSYWML 120 EEDYMHIVLV HYLEVKAGKS SSRTRGHDSM LQGAYVDSPL SMPSQTTDGE SSLSGQASEY 180 EAESADIYSG GAGYHSISRM QQHENGGGSV IDGSVVSSYG PASSVGNHQG LQATAPNTGF 240 YSHYQNNLPV IHNESNLGIT FNGPSTQFDL SSWNEMTKLD KGTHQLPPYQ SHVPSEQPPF 300 TEGPGIVSFT FDEVYNNGLD DGHANTDKEP LWQLPSANDG TTTEFQLPSA TDGITTEFQL 360 PSATDGTFGT VDSFEQNSKL LEEAINFPVL KTQSSNLSDI LKDSFKKSDS FTRWMSKELA 420 EVDDSQVKSS SGLYWNSEDA DNIIGASGRD QLDQFTLDPM VAQDQLFSIT DFFPSWTYAG 480 SKTRVLVTGR FLTSDEVIKL KWSCMFGEVE VPAEILVDGT LRCYSPSHKP GRVPFYVTCS 540 NRLACSEVRE FEYRPSDSQY MDAPSPHGAT NKIYLQARLD ELLSLGQDEQ NEFQAALSNP 600 TKE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_38704.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK365210 | 0.0 | AK365210.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2032B14. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020179697.1 | 0.0 | calmodulin-binding transcription activator 3-like isoform X3 | ||||
TrEMBL | F2DMU2 | 0.0 | F2DMU2_HORVV; Predicted protein | ||||
STRING | MLOC_38704.1 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP608 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64220.2 | 1e-131 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |