PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_38567.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | bHLH | ||||||||
Protein Properties | Length: 242aa MW: 24044.9 Da PI: 10.1725 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.3 | 2.3e-12 | 84 | 129 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq MLOC_38567.1 84 HSIAERLRRERIAERMKSLQELVPNA-----NKTDKASMLDEIIDYVKFLQ 129 99***********************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.01E-17 | 77 | 139 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.16E-13 | 77 | 133 | No hit | No description |
PROSITE profile | PS50888 | 17.282 | 79 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.6E-16 | 81 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-9 | 84 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.9E-13 | 85 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MDGGFKSPNG TGGDHALFNG FGVHGGAAAV QPTFGQGGSM SGQSFGGGPA ASGGTTAPAS 60 SGGGAAPPRQ TRVRARRGQA TDPHSIAERL RRERIAERMK SLQELVPNAN KTDKASMLDE 120 IIDYVKFLQL QVKVLSMSRL GGAAGMAPLV ASMSSEANSS AKSSNGGGNS AAAAAAKANG 180 GGESGGGGGG GGLRVTEQQV AKMMEEDMGT AMQYLQGKGL CLMPISLASA ISSATTTTTS 240 PP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 88 | 93 | RLRRER |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_38567.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005784 | 4e-48 | AP005784.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0014G10. | |||
GenBank | AP014965 | 4e-48 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012617 | 4e-48 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003560994.1 | 1e-122 | transcription factor bHLH82 | ||||
Swissprot | Q9ZUG9 | 5e-79 | BH066_ARATH; Transcription factor bHLH66 | ||||
TrEMBL | A0A287VWH7 | 1e-169 | A0A287VWH7_HORVV; Uncharacterized protein | ||||
STRING | MLOC_38567.1 | 1e-171 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1419 | 37 | 118 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58010.1 | 1e-46 | LJRHL1-like 3 |
Publications ? help Back to Top | |||
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