PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_38561.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ERF
Protein Properties Length: 311aa    MW: 33356.4 Da    PI: 6.8094
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_38561.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2643.2e-204998255
           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                  +y+G+r+++ +g+W+AeIrdps+     r++lg+++taeeAa+a++a ++k++g
  MLOC_38561.1 49 QYRGIRQRP-WGKWAAEIRDPSK---GVRVWLGTYDTAEEAARAYDAEARKIRG 98
                  69*******.**********965...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.18449106IPR001471AP2/ERF domain
SMARTSM003805.5E-3949112IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-2249107IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-3249107IPR001471AP2/ERF domain
CDDcd000181.89E-3249108No hitNo description
PRINTSPR003678.5E-125061IPR001471AP2/ERF domain
PfamPF008471.6E-125098IPR001471AP2/ERF domain
PRINTSPR003678.5E-127288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070483Biological Processdetection of hypoxia
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
APPPPAPATA GFAFAAAAEV ALRAPARRDA AVQHDGPAAK QVKRVRKNQY RGIRQRPWGK  60
WAAEIRDPSK GVRVWLGTYD TAEEAARAYD AEARKIRGKK AKVNFPEDAP TVQKSTLKPT  120
AAKSAKLAPP PKACEDQPFN HLSRGDNDLF AMFAFSDKKV PAKPTDSVDS LLPVKHLAPT  180
EAFGMNMLSD QSSNSFGSTD FGWDDEAMTP DYTSVFVPSA AAMPAYGEPA YLQGGAPKRM  240
RNNFGVAVLP QGNGAQDIPA FDNEVKYSLP YVESSSDGSM DNLLLNGAMQ DGASSGDLWS  300
LDELFMAAGG Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2049106563ATERF1
3gcc_A3e-2049106563ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00204DAPTransfer from AT1G53910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_38561.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3724810.0AK372481.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3003C21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194933.10.0ethylene-responsive transcription factor 1-like
TrEMBLF2E8K70.0F2E8K7_HORVV; Predicted protein
STRINGMLOC_38561.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112003142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.32e-31related to AP2 12