PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_3855.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 265aa    MW: 30427.5 Da    PI: 7.996
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_3855.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.79.7e-06934123
                 EEET..TTTEEESSHHHHHHHHHH.T CS
      zf-C2H2  1 ykCp..dCgksFsrksnLkrHirt.H 23
                 ++Cp   Cgk+Fs k n +rH +  H
  MLOC_3855.2  9 FTCPleGCGKRFSIKANIQRHVKEmH 34
                 89********************9988 PP
2zf-C2H217.31.3e-055375323
                 ET..TTTEEESSHHHHHHHHHHT CS
      zf-C2H2  3 Cp..dCgksFsrksnLkrHirtH 23
                 C+   C+k F+ +s+Lk+H  +H
  MLOC_3855.2 53 CQeeGCKKAFKYPSQLKKHEEMH 75
                 77779**************9988 PP
3zf-C2H216.32.7e-05142166223
                  EET..TTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                  kC+   C  +Fs+ksnL++H++  H
  MLOC_3855.2 142 KCTfdGCECTFSNKSNLNKHMKAcH 166
                  799999****************955 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.5E-7231IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.59E-7735No hitNo description
SMARTSM003554.0E-4934IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.217939IPR007087Zinc finger, C2H2
PROSITE patternPS0002801134IPR007087Zinc finger, C2H2
SMARTSM003550.0325175IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.3495176IPR007087Zinc finger, C2H2
PROSITE patternPS0002805375IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.3E-75375IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003553.583108IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028085108IPR007087Zinc finger, C2H2
SMARTSM0035519111132IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.11E-9126183No hitNo description
Gene3DG3DSA:3.30.160.607.0E-7126163IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0015141166IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.115141171IPR007087Zinc finger, C2H2
PROSITE patternPS000280143166IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.0E-4165194IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035527172198IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.517172198IPR007087Zinc finger, C2H2
PROSITE patternPS000280174198IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MLTHEGKLFT CPLEGCGKRF SIKANIQRHV KEMHEDEHEC KMDDAKSNQQ VICQEEGCKK  60
AFKYPSQLKK HEEMHAKLDY VEVVCCEPGC LKTFSNAGCL KAHNQSCHLY TQCDICGEKH  120
LKKNIKRHLR AHAEVHSTER LKCTFDGCEC TFSNKSNLNK HMKACHDQVR PFECRVVGCG  180
KTFHYKHVRD NHEKSSWHVY VEGDYEEMDE QLRSRPRGGR KRAAVTVETL TRKRVTIPSE  240
ASSLDDGAGY MRWLLSGGDD SNHAE
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_3855.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3745270.0AK374527.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3068C12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181263.10.0transcription factor IIIA-like
SwissprotQ84MZ45e-86TF3A_ARATH; Transcription factor IIIA
TrEMBLM0VYG10.0M0VYG1_HORVV; Uncharacterized protein
TrEMBLM0VYG20.0M0VYG2_HORVV; Uncharacterized protein
STRINGMLOC_3855.10.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.12e-89transcription factor IIIA