PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_38470.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 366aa    MW: 39205.5 Da    PI: 5.0791
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_38470.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.74.3e-13189236355
                   HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                   ++h + ErrRR+++N+ f  L++l+P+        K++Ka+iL +++ Y+++L+
  MLOC_38470.2 189 KNHVISERRRREKLNEMFLILKSLVPSiH------KVDKASILAETIAYLRELE 236
                   6899***********************66......****************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.15E-15184240No hitNo description
PROSITE profilePS5088816.444186235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.9E-18187248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-10189236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-17190245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-15192241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MVNRISTSFW DLKIPTSSKP EEPSSPSADD AGEADIVFQD LDHNTMAAMI PGELELGEVE  60
CLSDDNLERI TKEINGFYGL CDELDVGALD ENWIIGGSFE VMSSPEAPPA PAATGGITDG  120
IVTLSAAASS LSSCFTAWKR SWDSAEDMAA PVAGQSQKLL KKALAGGVWA INGGGGGGTA  180
RAQESSNTKN HVISERRRRE KLNEMFLILK SLVPSIHKVD KASILAETIA YLRELEQRVE  240
ELESNRAPSR PAGAAVRRHH DAAAKKMLAG SKRKASELGG DDGPNSVVNV TVTEKEVLLE  300
VQCRWKELLM TQVFDAIKSL RLDVLSVRAS TPDGLLALKI RAQFAGRGAV EPGMIIGALQ  360
TATRGR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1194199ERRRRE
2195200RRRREK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_38470.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3613870.0AK361387.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1139H12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020177997.10.0anthocyanin regulatory R-S protein-like
RefseqXP_020177998.10.0anthocyanin regulatory R-S protein-like
SwissprotP130273e-94ARRS_MAIZE; Anthocyanin regulatory R-S protein
TrEMBLM0VY900.0M0VY90_HORVV; Uncharacterized protein
STRINGMLOC_38470.20.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63650.33e-24bHLH family protein
Publications ? help Back to Top
  1. Pattanaik S,Xie CH,Yuan L
    The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength.
    Planta, 2008. 227(3): p. 707-15
    [PMID:18075757]
  2. Huang ZA, et al.
    The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.).
    J Genet Genomics, 2012. 39(3): p. 149-56
    [PMID:22464474]
  3. Perrot GH,Cone KC
    Nucleotide sequence of the maize R-S gene.
    Nucleic Acids Res., 1989. 17(19): p. 8003
    [PMID:2798145]
  4. Li P, et al.
    Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize.
    PLoS ONE, 2018. 13(1): p. e0190670
    [PMID:29304111]