PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_38420.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | C2H2 | ||||||||
Protein Properties | Length: 252aa MW: 28636.3 Da PI: 8.7222 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14 | 0.00015 | 136 | 155 | 3 | 22 |
ETTTTEEESSHHHHHHHHHH CS zf-C2H2 3 CpdCgksFsrksnLkrHirt 22 C++C+ ++++s+L +H+r MLOC_38420.2 136 CSICDANCTSQSDLANHLRG 155 ******************96 PP | |||||||
2 | zf-C2H2 | 14.2 | 0.00013 | 196 | 219 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt..H 23 C++C+ ++++s+L +H+r+ H MLOC_38420.2 196 MCSICSANCKSQSDLSSHLRSrrH 219 7*******************8666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.02E-9 | 61 | 106 | No hit | No description |
SMART | SM00451 | 6.4E-4 | 70 | 104 | IPR003604 | Zinc finger, U1-type |
SMART | SM00355 | 0.035 | 73 | 97 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12874 | 2.9E-8 | 73 | 97 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 75 | 97 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.53E-10 | 126 | 167 | No hit | No description |
SMART | SM00451 | 6.9E-6 | 131 | 165 | IPR003604 | Zinc finger, U1-type |
SMART | SM00355 | 0.35 | 134 | 158 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12874 | 8.8E-8 | 134 | 158 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 136 | 158 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.19E-9 | 177 | 228 | No hit | No description |
SMART | SM00451 | 4.4E-5 | 192 | 226 | IPR003604 | Zinc finger, U1-type |
SMART | SM00355 | 0.37 | 195 | 219 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12874 | 9.2E-7 | 195 | 219 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 197 | 219 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MPRHGTSPLP HDEPRDVPVP LARRPVKDRI EEWYQPPWCS LASEEDEPMV GAKRHKNALS 60 GVKRKRTAED PSWICSMCDA KCYNETDLQN HLRGRRHQEN IEALQGQDKG AEARLHEKGV 120 AQLADKNLKP VSKWLCSICD ANCTSQSDLA NHLRGRRHQR KIEAFQGEGK GSEARLHEKN 180 MPLLADNNQK QVPRWMCSIC SANCKSQSDL SSHLRSRRHQ ENIEAFQGEG KGSEAMLHEK 240 KMPQLAEGTK RT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_38420.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020172345.1 | 1e-147 | zinc finger protein 64 homolog, isoforms 1 and 2-like | ||||
TrEMBL | M0VY39 | 1e-179 | M0VY39_HORVV; Uncharacterized protein | ||||
STRING | MLOC_38420.1 | 1e-180 | (Hordeum vulgare) |