PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_38420.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 527aa    MW: 60129.1 Da    PI: 7.1771
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_38420.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00049187206322
                   ETTTTEEESSHHHHHHHHHH CS
       zf-C2H2   3 CpdCgksFsrksnLkrHirt 22 
                   C++C+  ++++s+L +H+r 
  MLOC_38420.1 187 CSICDANCTSQSDLANHLRG 206
                   ******************95 PP
2zf-C2H212.90.00032247270223
                   EETTTTEEESSHHHHHHHHHH..T CS
       zf-C2H2   2 kCpdCgksFsrksnLkrHirt..H 23 
                    C++C+  ++++s+L +H+r+  H
  MLOC_38420.1 247 MCSICSANCKSQSDLSSHLRSrrH 270
                   7*******************8666 PP
3zf-C2H212.30.0005307328122
                   EEETTTTEEESSHHHHHHHHHH CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirt 22 
                   ++C +C+  ++++s L++H+r 
  MLOC_38420.1 307 WTCDICSVNCTSQSVLESHLRG 328
                   58******************95 PP
4zf-C2H212.50.00046412432222
                   EETTTTEEESSHHHHHHHHHH CS
       zf-C2H2   2 kCpdCgksFsrksnLkrHirt 22 
                    C++C+  +++ s+L++H+r 
  MLOC_38420.1 412 MCNICNANCTSESDLENHLRG 432
                   7******************95 PP
5zf-C2H213.40.00023454475122
                   EEETTTTEEESSHHHHHHHHHH CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirt 22 
                   ++C +C+  ++++s+L +H+r 
  MLOC_38420.1 454 WTCDICNANCTSQSDLDSHLRG 475
                   58******************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.04E-9113157No hitNo description
SMARTSM004516.4E-4121155IPR003604Zinc finger, U1-type
SMARTSM003550.035124148IPR015880Zinc finger, C2H2-like
PfamPF128747.5E-8124148No hitNo description
PROSITE patternPS000280126148IPR007087Zinc finger, C2H2
SuperFamilySSF576671.09E-9177218No hitNo description
SMARTSM004516.9E-6182216IPR003604Zinc finger, U1-type
SMARTSM003550.35185209IPR015880Zinc finger, C2H2-like
PfamPF128742.2E-7185209No hitNo description
PROSITE patternPS000280187209IPR007087Zinc finger, C2H2
SuperFamilySSF576674.21E-9228279No hitNo description
SMARTSM004514.4E-5243277IPR003604Zinc finger, U1-type
SMARTSM003550.37246270IPR015880Zinc finger, C2H2-like
PfamPF128742.4E-6246270No hitNo description
PROSITE patternPS000280248270IPR007087Zinc finger, C2H2
SuperFamilySSF576672.68E-10297339No hitNo description
SMARTSM004513.8E-7304338IPR003604Zinc finger, U1-type
SMARTSM003550.43307331IPR015880Zinc finger, C2H2-like
PfamPF128747.6E-9307331No hitNo description
PROSITE patternPS000280309331IPR007087Zinc finger, C2H2
SuperFamilySSF576675.74E-10341383No hitNo description
SMARTSM004517.1E-7347381IPR003604Zinc finger, U1-type
SMARTSM003550.25350374IPR015880Zinc finger, C2H2-like
PfamPF128741.5E-8350374No hitNo description
PROSITE patternPS000280352374IPR007087Zinc finger, C2H2
SuperFamilySSF576671.98E-10403443No hitNo description
SMARTSM004516.6E-6408442IPR003604Zinc finger, U1-type
SMARTSM003550.072411435IPR015880Zinc finger, C2H2-like
PfamPF128744.6E-9411435No hitNo description
PROSITE patternPS000280413435IPR007087Zinc finger, C2H2
SuperFamilySSF576671.19E-9449486No hitNo description
SMARTSM004512.5E-7451485IPR003604Zinc finger, U1-type
SMARTSM003550.092454478IPR015880Zinc finger, C2H2-like
PfamPF128742.9E-9454478No hitNo description
PROSITE patternPS000280456478IPR007087Zinc finger, C2H2
SuperFamilySSF576671.7E-8492526No hitNo description
SMARTSM004510.0041494526IPR003604Zinc finger, U1-type
SMARTSM003550.5497521IPR015880Zinc finger, C2H2-like
PfamPF128746.2E-8497521No hitNo description
PROSITE patternPS000280499521IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MTIQELHREL LQEQIRQRVI VAELAKQQQL EADFQRELLY RDVDARFRQI TMPRHGTSPL  60
PHDEPRDVPV PLARRPVKDR IEEWYQPPWC SLASEEDEPM VGAKRHKNAL SGVKRKRTAE  120
DPSWICSMCD AKCYNETDLQ NHLRGRRHQE NIEALQGQDK GAEARLHEKG VAQLADKNLK  180
PVSKWLCSIC DANCTSQSDL ANHLRGRRHQ RKIEAFQGEG KGSEARLHEK NMPLLADNNQ  240
KQVPRWMCSI CSANCKSQSD LSSHLRSRRH QENIEAFQGE GKGSEAMLHE KKMPQLAANN  300
QKPVPRWTCD ICSVNCTSQS VLESHLRGRR HQENIEALQG DDKGTEVSRW TCDICNVNCT  360
SECDLESHVR GRRHQENIEA FQGEGKGSEA RLHEKKMLQL ADNNQEPVSR WMCNICNANC  420
TSESDLENHL RGRRHQENIE ALQGDGKDPE VSGWTCDICN ANCTSQSDLD SHLRGRRHQE  480
NVEAFQGGGK GTEASRWICD ICNANCMSQS DFESHLKGRR HQSNVQA
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_38420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020172345.10.0zinc finger protein 64 homolog, isoforms 1 and 2-like
TrEMBLM0VY390.0M0VY39_HORVV; Uncharacterized protein
STRINGMLOC_38420.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1416655