PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_38133.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C3H
Protein Properties Length: 304aa    MW: 35283.6 Da    PI: 9.8999
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_38133.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.74.7e-09281303426
                   ---SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                   + Cr+++++ +C+y ++CkF+Hg
  MLOC_38133.2 281 KACRYYQQGLWCPYEGSCKFSHG 303
                   57******88************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.953277304IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-5278303IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-5280303IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-6281303IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MFKNPQGHNN QLQQQNKVLP QVGTTKTFSI LGQAPCLQYG GSGNAVQQQK LSKPTPTEQI  60
RNQSQPLKHE HQNLVLPQED AKKGTNKVHS IDHGKAPCLQ YVGSGNARQQ QSSRLALPQQ  120
IKNPPQPPKH QHTEVLRQED GNRTYRVEPV DRQNNNYHNT RYDVTAFQRH GTQHAKTHQH  180
GSNGHPYAHV DSQWHQPLRP RIQDFSSRNQ EGDYRDHRQT TREQYNPQGR HHHNQYGHGQ  240
MIQDQYQPQK THHQNGHDSW RMNHNQYHPQ ENHAQQFPAP KACRYYQQGL WCPYEGSCKF  300
SHGS
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_38133.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3749660.0AK374966.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3081H22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151518.10.0zinc finger CCCH domain-containing protein 62-like isoform X2
TrEMBLM0VX950.0M0VX95_HORVV; Uncharacterized protein
STRINGMLOC_38133.10.0(Hordeum vulgare)