PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_37844.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

NAC

Protein Properties

Length: 217aa MW: 25165.2 Da PI: 6.759

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_37844.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	176	1.1e-54	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeelv++yLk+kv+g+++el ++i+evd+yk+ePw+L k + +++ ewyfF +rd+ky++g r+nrat++gyWk+tgkd+++ MLOC_37844.1 6 LPPGFRFHPTDEELVNYYLKRKVHGQSIEL-DIIPEVDLYKCEPWELAeKsFLPSRDPEWYFFGPRDRKYPNGCRTNRATRAGYWKSTGKDRSINY- 100 79**************************.99**********84335556888*********************************9. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +g+kktLvfy+grap+g +++Wvmheyr+ MLOC_37844.1 101 QKRSIGMKKTLVFYQGRAPQGIRSNWVMHEYRI 133 9999*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.45E-64	4	157	IPR003441	NAC domain
PROSITE profile	PS51005	59.765	6	156	IPR003441	NAC domain
Pfam	PF02365	1.3E-30	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MAPVGLPPGF RFHPTDEELV NYYLKRKVHG QSIELDIIPE VDLYKCEPWE LAEKSFLPSR 60 DPEWYFFGPR DRKYPNGCRT NRATRAGYWK STGKDRSINY QKRSIGMKKT LVFYQGRAPQ 120 GIRSNWVMHE YRIEESECNN TMGVQDSYAL CRVFKKNVPA GEFEKQGECS SSQAKGNQEQ 180 VTDFEEAGES SAANENDKDN SWMQFIVEDL WCSNKTK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	9e-56	1	160	15	172	NAC domain-containing protein 19
3swm_B	9e-56	1	160	15	172	NAC domain-containing protein 19
3swm_C	9e-56	1	160	15	172	NAC domain-containing protein 19
3swm_D	9e-56	1	160	15	172	NAC domain-containing protein 19
3swp_A	9e-56	1	160	15	172	NAC domain-containing protein 19
3swp_B	9e-56	1	160	15	172	NAC domain-containing protein 19
3swp_C	9e-56	1	160	15	172	NAC domain-containing protein 19
3swp_D	9e-56	1	160	15	172	NAC domain-containing protein 19
3ulx_A	7e-56	2	156	11	168	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_37844.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC137596	1e-50	AC137596.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 9 clone OSJNBb0031H05, complete sequence.
GenBank	AP005564	1e-50	AP005564.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1228_C03, complete sequence.
GenBank	AP014965	1e-50	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBank	CP012617	1e-50	CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020186594.1	1e-162	NAC domain-containing protein 86-like
Swissprot	Q9FFI5	3e-86	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	A0A287S5L5	1e-164	A0A287S5L5_HORVV; Uncharacterized protein
STRING	MLOC_37844.1	1e-164	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3713	38	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17730.1	1e-108	NAC domain containing protein 57

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]