PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_37780.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | MYB_related | ||||||||
Protein Properties | Length: 200aa MW: 22963.7 Da PI: 11.2987 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.8 | 4.5e-17 | 75 | 122 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l + ++++G g+W+++++ g+ R++k+c++rw +yl MLOC_37780.1 75 RGLWSPEEDEKLMNHIAMYGHGCWSSVPKLAGLERCGKSCRLRWINYL 122 788*******************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.8E-26 | 67 | 125 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.003 | 70 | 126 | IPR017930 | Myb domain |
SMART | SM00717 | 8.6E-13 | 74 | 124 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-15 | 75 | 122 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.59E-22 | 77 | 151 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.44E-11 | 78 | 122 | No hit | No description |
PROSITE profile | PS50090 | 5.575 | 123 | 168 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-9 | 126 | 150 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MRTYLRATAR PLPSRPLLLL SPSPYTSASP SPRCHHRVSI LVQPFVSRIS WRHLTADCRS 60 AMAKQSCFHK KRMRRGLWSP EEDEKLMNHI AMYGHGCWSS VPKLAGLERC GKSCRLRWIN 120 YLRPDLKRGT FSQEEEDLII RLHSMLGNKY VTWPVFQQSI ELQMTSNCIS ISGGHRLRPS 180 CPAGRTTKSR TSGIRTSRRS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 6e-15 | 73 | 151 | 25 | 102 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_37780.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK355024 | 0.0 | AK355024.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1014N14. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | F2CTS2 | 1e-144 | F2CTS2_HORVV; Predicted protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G57560.1 | 6e-47 | myb domain protein 50 |