PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MLOC_37768.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 470aa MW: 52894.3 Da PI: 7.4814 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43.5 | 5.8e-14 | 13 | 76 | 32 | 99 |
--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 32 esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 s t+ le ++g++++v++ + ++++++l++GW Fv+an++ e D+++F++ g+ +f +v vf++ MLOC_37768.4 13 LSGTIELEAPNGNVYDVRI--TERRNKTLLRSGWGAFVDANHIVESDSLMFRHRGNCRF--KVVVFDS 76 4569***************..999999*************************9998888..7877775 PP | |||||||
2 | B3 | 34.4 | 4e-11 | 206 | 288 | 13 | 96 |
T.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS B3 13 s.grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 +++v+pk++a +h k+++++l+l d ++++W +++++ +g++ l+ +F+++n+L egD++vF+ + + ++++++v+v MLOC_37768.4 206 YpDLVVIPKDYALAHFPRKNQTIKLQLPD-QSKKWYCEFRVKSDGGHFNLK--ECGFARDNHLLEGDMCVFHPMMNrKGRTFKVMV 288 35789**********76655655555555.669***999666666667777..679****************66443777777665 PP | |||||||
3 | B3 | 43.8 | 4.5e-14 | 375 | 467 | 10 | 99 |
HHHTT-EE--HHH.HTT...---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS..SEE..EEEEE-S CS B3 10 vlksgrlvlpkkfaeeh...ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr..sefelvvkvfrk 99 v++++ + ++ +fa ++ e+s l+l+ ++++W ++ r k+g++ +++GW +F+++n+L+egD+++F+l+++ ++++v ++r+ MLOC_37768.4 375 VMTRSSILVSLSFAIKYsatY-LREGSGSLVLQVeGKSQVWHDEM--REKGGAMRIRAGWTSFASDNNLREGDICLFELMKNegGPKKMMVYIIRR 467 556666778889999998852.33455567777735669******..*******************************995536777888888887 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 13.394 | 1 | 77 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.09E-15 | 1 | 75 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 3.4E-16 | 2 | 79 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.16E-17 | 2 | 79 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 6.6E-12 | 2 | 75 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0091 | 5 | 77 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.4E-12 | 185 | 288 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.61E-14 | 187 | 288 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.43E-12 | 192 | 289 | No hit | No description |
SMART | SM01019 | 0.028 | 194 | 295 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 7.881 | 195 | 292 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.6E-9 | 198 | 288 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 4.71E-16 | 365 | 470 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.3E-16 | 366 | 468 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.871 | 366 | 468 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.94E-13 | 370 | 466 | No hit | No description |
SMART | SM01019 | 1.1E-6 | 372 | 468 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-11 | 375 | 467 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 470 aa Download sequence Send to blast |
MPESFVNCFA WKLSGTIELE APNGNVYDVR ITERRNKTLL RSGWGAFVDA NHIVESDSLM 60 FRHRGNCRFK VVVFDSSGCE KVVSCARRQG NTNDQAPSTN STDILTSFTD GNTHSSARGR 120 SDDYCRKRAK KDAIAYPSEG SSEDSPYEHQ SSESDDQMLP TPVYVLSGKC YVTDEDEASI 180 IALAQEIQPE MPLLVVMMTK PSVKPYPDLV VIPKDYALAH FPRKNQTIKL QLPDQSKKWY 240 CEFRVKSDGG HFNLKECGFA RDNHLLEGDM CVFHPMMNRK GRTFKVMVHL LCKASIDHTS 300 SKNGLTSKKN VPTLCIKEDT NEGEEIPSLG HEEHGINDEE PYMMPRGTCL TRLQKKKVLG 360 KVEAIGSDLH IYIAVMTRSS ILVSLSFAIK YSATYLREGS GSLVLQVEGK SQVWHDEMRE 420 KGGAMRIRAG WTSFASDNNL REGDICLFEL MKNEGGPKKM MVYIIRRELC |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | MLOC_37768.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020152556.1 | 0.0 | B3 domain-containing protein Os03g0619600-like | ||||
TrEMBL | A0A287N8K9 | 0.0 | A0A287N8K9_HORVV; Uncharacterized protein | ||||
STRING | MLOC_37768.2 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G18990.1 | 9e-15 | B3 family protein |