PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_37768.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 469aa    MW: 52795.2 Da    PI: 7.4814
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_37768.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.55.7e-1413763299
                  --SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
            B3 32 esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                   s t+ le ++g++++v++  + ++++++l++GW  Fv+an++ e D+++F++ g+ +f  +v vf++
  MLOC_37768.3 13 LSGTIELEAPNGNVYDVRI--TERRNKTLLRSGWGAFVDANHIVESDSLMFRHRGNCRF--KVVVFDS 76
                  4569***************..999999*************************9998888..7877775 PP
2B335.91.3e-11198287596
                   -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
            B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 
                   +t+++v     lv+pk++a +h   k+++++l+l d ++++W  +++++  +g++ l+    +F+++n+L egD++vF+ + + ++++++v+v
  MLOC_37768.3 198 MTKPSVKPYPDLVIPKDYALAHFPRKNQTIKLQLPD-QSKKWYCEFRVKSDGGHFNLK--ECGFARDNHLLEGDMCVFHPMMNrKGRTFKVMV 287
                   67778888888***********76655655555555.669***999666666667777..679****************66443777777665 PP
3B343.84.4e-143744661099
                   HHHTT-EE--HHH.HTT...---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS..SEE..EEEEE-S CS
            B3  10 vlksgrlvlpkkfaeeh...ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr..sefelvvkvfrk 99 
                   v++++ + ++ +fa ++       e+s  l+l+   ++++W  ++  r k+g++ +++GW +F+++n+L+egD+++F+l+++    ++++v ++r+
  MLOC_37768.3 374 VMTRSSILVSLSFAIKYsatY-LREGSGSLVLQVeGKSQVWHDEM--REKGGAMRIRAGWTSFASDNNLREGDICLFELMKNegGPKKMMVYIIRR 466
                   556666778889999998852.33455567777735669******..*******************************995536777888888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.394177IPR003340B3 DNA binding domain
CDDcd100173.05E-15175No hitNo description
Gene3DG3DSA:2.40.330.103.4E-16279IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-17279IPR015300DNA-binding pseudobarrel domain
PfamPF023626.6E-12275IPR003340B3 DNA binding domain
SMARTSM010190.0091577IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-12185287IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.22E-14187287IPR015300DNA-binding pseudobarrel domain
CDDcd100176.01E-14192288No hitNo description
PROSITE profilePS508638.177194291IPR003340B3 DNA binding domain
SMARTSM010190.0042194294IPR003340B3 DNA binding domain
PfamPF023623.6E-10197287IPR003340B3 DNA binding domain
SuperFamilySSF1019364.71E-16364469IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.3E-16365467IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.871365467IPR003340B3 DNA binding domain
CDDcd100173.81E-13369465No hitNo description
SMARTSM010191.1E-6371467IPR003340B3 DNA binding domain
PfamPF023621.1E-11374466IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MPESFVNCFA WKLSGTIELE APNGNVYDVR ITERRNKTLL RSGWGAFVDA NHIVESDSLM  60
FRHRGNCRFK VVVFDSSGCE KVVSCARRQG NTNDQAPSTN STDILTSFTD GNTHSSARGR  120
SDDYCRKRAK KDAIAYPSEG SSEDSPYEHQ SSESDDQMLP TPVYVLSGKC YVTDEDEASI  180
IALAQEIQPE MPLLVVMMTK PSVKPYPDLV IPKDYALAHF PRKNQTIKLQ LPDQSKKWYC  240
EFRVKSDGGH FNLKECGFAR DNHLLEGDMC VFHPMMNRKG RTFKVMVHLL CKASIDHTSS  300
KNGLTSKKNV PTLCIKEDTN EGEEIPSLGH EEHGINDEEP YMMPRGTCLT RLQKKKVLGK  360
VEAIGSDLHI YIAVMTRSSI LVSLSFAIKY SATYLREGSG SLVLQVEGKS QVWHDEMREK  420
GGAMRIRAGW TSFASDNNLR EGDICLFELM KNEGGPKKMM VYIIRRELC
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_37768.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020152556.10.0B3 domain-containing protein Os03g0619600-like
TrEMBLA0A287N8K90.0A0A287N8K9_HORVV; Uncharacterized protein
STRINGMLOC_37768.20.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.15e-14B3 family protein