PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_37654.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | Dof | ||||||||
Protein Properties | Length: 350aa MW: 36206.8 Da PI: 9.6273 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 120.5 | 5.9e-38 | 81 | 138 | 3 | 60 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 + l+cprC+s+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rk + MLOC_37654.1 81 QPPLRCPRCNSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKPRP 138 67799**************************************************875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 1.2E-31 | 83 | 137 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 1.0E-25 | 84 | 135 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.096 | 84 | 138 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 86 | 122 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MIQELLGGTA MDQHQLQQLK CAGNAVNHHG HGSLPMVLQP ISSNPSPTSS STSSRSSTQR 60 SPSATSSPQG QGQQGPPGQE QPPLRCPRCN SSNTKFCYYN NYNLTQPRHF CKTCRRYWTK 120 GGALRNVPIG GGCRKPRPMP APVAKAQPSS CKSMLSMAVA TAPSLGLGMG VGGGMSWASA 180 PQTATAQLMA LLNSARAGYT GSNMHRLLGL DTMGQLQIMP GSANGGPGMS PSLWSQTTQR 240 PTMPPPAMHL DSHLSMGSLG LGQGHGHHNL LSGLELKPPS SSPSPSSLAA SYYSDQLNAV 300 VSNGGAGRPH PYDSPASSYP CSTAMCALPP SASTVSAAPG SHSGGMEQPP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_37654.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM084363 | 0.0 | AM084363.1 Hordeum vulgare subsp. vulgare partial dof15 gene for dof zinc finger protein 15. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020193682.1 | 1e-174 | uncharacterized protein LOC109779469 | ||||
TrEMBL | A0A287SFI8 | 0.0 | A0A287SFI8_HORVV; Uncharacterized protein | ||||
STRING | MLOC_37654.1 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7710 | 31 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60850.1 | 1e-31 | OBF binding protein 4 |