PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_37647.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 276aa    MW: 31985 Da    PI: 7.6055
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_37647.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.21.9e-08196242347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqky 47 
                       WT eE + lvd++  +G ++W++  ++      Rt+ ++k++w+++
     MLOC_37647.2 196 HWTSEEVKELVDGISVYGDRQWTKLKNERFpiSVRTAVHLKDKWRNL 242
                      6***********************9876545*77***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.494189247IPR017930Myb domain
SuperFamilySSF466892.47E-11191245IPR009057Homeodomain-like
SMARTSM007172.5E-4193245IPR001005SANT/Myb domain
PfamPF002491.1E-5196242IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-9196244IPR009057Homeodomain-like
CDDcd116601.17E-15197244No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MSDPLPSYQM EIEDHSTYVD YDVIDFQALL EGPQDEHDLH RWLKGAFIPT YIKEVNLTHE  60
IECKFYSSTS DDGMTIQRHV PAQPEVLLER EEAPATTTLN GGGEAKAEEE MKEGGWAMYP  120
PPCHRRSRRL ACTATPPEEW TCDLLDYIPK SGWRHGSRVR SARERGTWSI NIKPCFRDLH  180
SASVGQKHGR RRNNDHWTSE EVKELVDGIS VYGDRQWTKL KNERFPISVR TAVHLKDKWR  240
NLVKAFTGNV KRRISPRLDK DCVEKIQRLA ADYPRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_37647.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020193059.11e-103uncharacterized protein LOC109778885
TrEMBLA0A287XVQ90.0A0A287XVQ9_HORVV; Uncharacterized protein
STRINGMLOC_37647.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1950923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17460.13e-11TRF-like 3